Browse Element(s) Details


OsAffx.29768.1.S1_at

Description tigr:9637.m00640
TID=OsAffx.29768.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0869011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08670Os.54495.1.S1_at5/119+4553930..4554720expressed protein
LOC_Os09g08680OsAffx.6211.1.S1_x_at11/119+4555816..4567790expressed protein
LOC_Os09g08680Os.26513.1.A1_at11/119+4555816..4567790expressed protein
LOC_Os09g08690OsAffx.29768.1.S1_at11/119+4568163..4568663hypothetical protein
LOC_Os09g08700OsAffx.29769.1.S1_at11/119+4570504..4571628hypothetical protein
LOC_Os09g08710Os.5199.1.S1_at11/119+4576706..4579685expressed protein
LOC_Os09g08710Os.5199.2.S1_x_at10/119+4576706..4579685expressed protein
LOC_Os09g08710Os.20593.1.S1_x_at1/119+4576706..4579685expressed protein
LOC_Os09g08720OsAffx.29770.1.S1_at11/119+4591170..4594141NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29768.1.S1_at--221--4251Chr09:4568257..4568281 (25 bp)
CCGTCGTCGATGATGAGGCAGTGCC
LOC_Os09g08690
OsAffx.29768.1.S1_at--1119--5571Chr09:4568349..4568373 (25 bp)
GAAATGGCCGGCAAGCCTAGAGCAC
LOC_Os09g08690
OsAffx.29768.1.S1_at--1116--2651Chr09:4568361..4568385 (25 bp)
AAGCCTAGAGCACGGCCATCTCCGG
LOC_Os09g08690
OsAffx.29768.1.S1_at--413--551Chr09:4568391..4568415 (25 bp)
ATCCCTGGGAGCACGGCGTGGAACA
LOC_Os09g08690
OsAffx.29768.1.S1_at--309--8091Chr09:4568410..4568434 (25 bp)
GGAACAGGACTAGCCAAAGCACCGG
LOC_Os09g08690
OsAffx.29768.1.S1_at--932--7231Chr09:4568442..4568466 (25 bp)
GTCCCATGGTCCTGCAGCGTCGTAC
LOC_Os09g08690
OsAffx.29768.1.S1_at--384--7211Chr09:4568460..4568484 (25 bp)
GTCGTACCCATCAACCGTCGAGGAT
LOC_Os09g08690
OsAffx.29768.1.S1_at--567--10251Chr09:4568574..4568598 (25 bp)
TTTGTGAGACTGACAGGCGGGTCCC
LOC_Os09g08690
OsAffx.29768.1.S1_at--106--892Chr09:4568588..4568612 (25 bp)
AGGCGGGTCCCACATTGATATTTAC
LOC_Os09g08690
OsAffx.29768.1.S1_at--712--8831Chr09:4568603..4568627 (25 bp)
TGATATTTACACTGCGTTGCCACGT
LOC_Os09g08690
OsAffx.29768.1.S1_at--414--10471Chr09:4568609..4568633 (25 bp)
TTACACTGCGTTGCCACGTTGGCAT
LOC_Os09g08690
Target Sequence 
CCGTCGTCGATGATGAGGCAGTGCCGGAGCGGAGCATGAACGTGGGGTCGGCGACGCTCTTCGCGCGGCGGTCGCACTTG
AGGGCGAGAAGGGAAATGGCCGGCAAGCCTAGAGCACGGCCATCTCCGGCGAGGATCCCTGGGAGCACGGCGTGGAACAG
GACTAGCCAAAGCACCGGCGTCGCCGTCCCATGGTCCTGCAGCGTCGTACCCATCAACCGTCGAGGATTGATGAAGGGGA
GGACGGTGGGACTGGCTAGAGCAGCGCCGGTGGCCGGCGGGGCTTGGCCGGACCAGGGGGAGAGAGAAAAGGGAGAGTTT
GTGAGACTGACAGGCGGGTCCCACATTGATATTTACACTGCGTTGCCACGTTGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29768.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis