Browse Element(s) Details


OsAffx.29769.1.S1_at

Description tigr:9637.m00641
TID=OsAffx.29769.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0870011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08670Os.54495.1.S1_at5/119+4553930..4554720expressed protein
LOC_Os09g08680OsAffx.6211.1.S1_x_at11/119+4555816..4567790expressed protein
LOC_Os09g08680Os.26513.1.A1_at11/119+4555816..4567790expressed protein
LOC_Os09g08690OsAffx.29768.1.S1_at11/119+4568163..4568663hypothetical protein
LOC_Os09g08700OsAffx.29769.1.S1_at11/119+4570504..4571628hypothetical protein
LOC_Os09g08710Os.5199.1.S1_at11/119+4576706..4579685expressed protein
LOC_Os09g08710Os.5199.2.S1_x_at10/119+4576706..4579685expressed protein
LOC_Os09g08710Os.20593.1.S1_x_at1/119+4576706..4579685expressed protein
LOC_Os09g08720OsAffx.29770.1.S1_at11/119+4591170..4594141NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29769.1.S1_at--1102--10611Chr09:4571060..4571084 (25 bp)
TTCGTGTCCAAGTACTGCCGCTTCC
LOC_Os09g08700
OsAffx.29769.1.S1_at--114--3231Chr09:4571068..4571092 (25 bp)
CAAGTACTGCCGCTTCCGTACGAGT
LOC_Os09g08700
OsAffx.29769.1.S1_at--995--6091Chr09:4571089..4571113 (25 bp)
GAGTGCTTTTGGTCGATGCCGCCGC
LOC_Os09g08700
OsAffx.29769.1.S1_at--570--3791Chr09:4571117..4571141 (25 bp)
CTCCTCCGTACCAGCAGTTGGTGAT
LOC_Os09g08700
OsAffx.29769.1.S1_at--958--3351Chr09:4571128..4571152 (25 bp)
CAGCAGTTGGTGATCCCCGTGGAAT
LOC_Os09g08700
OsAffx.29769.1.S1_at--743--8611Chr09:4571135..4571159 (25 bp)
TGGTGATCCCCGTGGAATGCTCCCA
LOC_Os09g08700
OsAffx.29769.1.S1_at--880--1751Chr09:4571327..4571351 (25 bp)
ACCTCGACGACGCACTACGGCGGTA
LOC_Os09g08700
OsAffx.29769.1.S1_at--849--5791Chr09:4571371..4571395 (25 bp)
GACCCGTCGGATTCTCGGCCGTACG
LOC_Os09g08700
OsAffx.29769.1.S1_at--847--92Chr09:4571381..4571405 (25 bp)
ATTCTCGGCCGTACGAGCTGGTGGT
LOC_Os09g08700
OsAffx.29769.1.S1_at--1072--1751Chr09:4571534..4571558 (25 bp)
ACCTCGACCTGACATTGCCAGAGCG
LOC_Os09g08700
OsAffx.29769.1.S1_at--875--9111Chr09:4571573..4571597 (25 bp)
TGCTGCATCATCGTCGACCCGATGG
LOC_Os09g08700
Target Sequence 
TTCGTGTCCAAGTACTGCCGCTTCCGTACGAGTGCTTTTGGTCGATGCCGCCGCCTCCTCCTCCGTACCAGCAGTTGGTG
ATCCCCGTGGAATGCTCCCAAGCGATGCTCGCCTCGCTGCTCCGAGCGCGGCCGCTCTGCGGCGAGCGACTCCGAGAGGC
GCGCGCCACCGCCGAGCACGCCCTTGCCGACGCCAAGGCGGAGGGCGACGACCTCGCGGCGGTCGACGTCAACCTCGTCC
TCACCTTCCTCGCCGCCCGAGATGGGGACCTCGACGACGCACTACGGCGGTACAAGGCGGCCGTGCAGAAAGACCCGTCG
GATTCTCGGCCGTACGAGCTGGTGGTTGCGGCGGCGCTCGGCTCCGGGACGCTGACGACCCTCGGCCTCGAGCGTGGGGG
ACGAGGGCGCCTCGTCTTGGTTGCCCCGTGGAGGGAGGTGGACGCAAGGCTCACGGCGGCGGTGCTGGACGACGACCTCG
ACCTGACATTGCCAGAGCGCGTGCAGCTCCGCCTGCTGCATCATCGTCGACCCGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29769.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis