Browse Element(s) Details


OsAffx.29786.1.S1_at

Description tigr:9637.m00776
TID=OsAffx.29786.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1019010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10140NANA9+5514334..5517536Zinc knuckle family protein
LOC_Os09g10149NANA9+5519849..5520929retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10160NANA9+5521125..5524327Zinc knuckle family protein
LOC_Os09g10170NANA9+5526640..5532450retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10180NANA9+5538419..5538931hypothetical protein
LOC_Os09g10190OsAffx.29786.1.S1_at10/119+5542051..5544026hypothetical protein
LOC_Os09g10190OsAffx.29786.1.S1_x_at10/119+5542051..5544026hypothetical protein
LOC_Os09g10190OsAffx.23450.1.S1_at2/119+5542051..5544026hypothetical protein
LOC_Os09g10190Os.46012.1.S1_at1/119+5542051..5544026hypothetical protein
LOC_Os09g10200Os.55370.1.S1_at11/119+5553239..5554029SKP1-like protein 1A, putative, expressed
LOC_Os09g10204Os.51444.1.S1_at11/119+5555531..5556221expressed protein
LOC_Os09g10210OsAffx.6222.1.S1_x_at11/119+5558196..5558420hypothetical protein
LOC_Os09g10220Os.45173.1.S1_x_at6/119+5562389..5571172transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g10220Os.45976.1.S1_x_at1/119+5562389..5571172transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g10220Os.45976.1.S1_at1/119+5562389..5571172transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29786.1.S1_at--249--10071Chr09:5542085..5542109 (25 bp)
TAGGGTATAAACCAAATGTCTTCTC
LOC_Os09g10190
OsAffx.29786.1.S1_at--1154--2558Chr12:14567958..14567982 (25 bp)
AACTGAGGTTGATTAATTATTGCAA
NONE
OsAffx.29786.1.S1_at--204--6177Chr12:14567962..14567983 (22 bp)
GAGGTTGATTAATTATTGCAAGCGG
NONE
OsAffx.29786.1.S1_at--519--8831NONE
TGATTAATTATTGCAAGCGGAGGAA
NONE
OsAffx.29786.1.S1_at--610--5791Chr09:5543838..5543862 (25 bp)
GACGACAATGTCCAGCAACCACGAA
LOC_Os09g10190
OsAffx.29786.1.S1_at--771--1831Chr09:5543839..5543863 (25 bp)
ACGACAATGTCCAGCAACCACGAAG
LOC_Os09g10190
OsAffx.29786.1.S1_at--339--4111Chr09:5543840..5543864 (25 bp)
CGACAATGTCCAGCAACCACGAAGT
LOC_Os09g10190
OsAffx.29786.1.S1_at--1102--2211Chr09:5543842..5543866 (25 bp)
ACAATGTCCAGCAACCACGAAGTCG
LOC_Os09g10190
OsAffx.29786.1.S1_at--875--3191Chr09:5543843..5543867 (25 bp)
CAATGTCCAGCAACCACGAAGTCGA
LOC_Os09g10190
OsAffx.29786.1.S1_at--797--752Chr09:5543845..5543869 (25 bp)
ATGTCCAGCAACCACGAAGTCGACG
LOC_Os09g10190
OsAffx.29786.1.S1_at--499--8311Chr09:5543874..5543898 (25 bp)
GGCTCGGTCGAAGGTGGAGTAGATC
LOC_Os09g10190
Target Sequence 
TAGGGTATAAACCAAATGTCTTCTCCTTCTGGATCATTTTTCTTCAACTGAGGTTGATTAATTATTGCAAGCGGAGGAAA
ACCAGCGGACGGGCTTTACTTTGGCGCTGCGATGCCGAAGAAGGCGACGACAATGTCCAGCAACCACGAAGTCGACGGCG
AGGCTCGGTCGAAGGTGGAGTAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis