Browse Element(s) Details


OsAffx.29789.3.S1_x_at

Description tigr:9633.m00868
TID=OsAffx.29789.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2227011/11hAT family dimerisation domain containing protein
LOC_Os05g0957011/11hAT family dimerisation domain containing protein
LOC_Os07g4761011/11hAT family dimerisation domain containing protein
LOC_Os09g2668010/11hAT family dimerisation domain containing protein
LOC_Os12g3954010/11hAT family dimerisation domain containing protein
LOC_Os01g332609/11ABC-2 type transporter family protein
LOC_Os01g142609/11hAT family dimerisation domain containing protein
LOC_Os02g562907/11hypothetical protein
LOC_Os06g223003/11hAT family dimerisation domain containing protein
LOC_Os11g444501/11hypothetical protein
LOC_Os08g202901/11transposase, putative
LOC_Os12g260201/11hypothetical protein
LOC_Os12g234301/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22250OsAffx.16358.1.S1_at11/117+12462786..12463442hypothetical protein
LOC_Os07g22260NANA7+12476857..12477153hypothetical protein
LOC_Os07g22270OsAffx.29789.3.S1_x_at11/117+12480598..12485144hAT family dimerisation domain containing protein
LOC_Os07g22270OsAffx.29789.1.S1_x_at7/117+12480598..12485144hAT family dimerisation domain containing protein
LOC_Os07g22270OsAffx.31885.2.S1_x_at2/117+12480598..12485144hAT family dimerisation domain containing protein
LOC_Os07g22280OsAffx.31760.1.S1_at1/117+12485759..12489857retrotransposon, putative, centromere-specific
LOC_Os07g22280OsAffx.31892.2.S1_x_at1/117+12485759..12489857retrotransposon, putative, centromere-specific
LOC_Os07g22290NANA7+12495937..12497267retrotransposon protein, putative, unclassified
LOC_Os07g22300NANA7+12499832..12500278hypothetical protein
LOC_Os07g22310OsAffx.25367.1.S1_at1/117+12502720..12510024retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015692biological_processlead ion transport
GO:0005886cellular_componentplasma membrane
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29789.3.S1_x_at--790--5558Chr09:16205860..16205884 (25 bp)
GAAAGCCGCCAAAAGCACGTCCATC
LOC_Os09g26680
OsAffx.29789.3.S1_x_at--1067--5179Chr09:16205899..16205923 (25 bp)
GCAAGGGTCCACGATCGACTAGTGT
LOC_Os09g26680
OsAffx.29789.3.S1_x_at--481--1679Chr09:16206081..16206102 (22 bp)
AGCCCCGTTCAATTCACTGGTGAGG
LOC_Os09g26680
OsAffx.29789.3.S1_x_at--188--4619Chr09:16206189..16206213 (25 bp)
GCGACTTCACTCATGCTACTCAGGA
LOC_Os09g26680
OsAffx.29789.3.S1_x_at--620--77713Chr12:13245166..13245190 (25 bp)
GGTGCTCCAAGCTCTCAACGAACTA
LOC_Os12g23430
OsAffx.29789.3.S1_x_at--736--8019Chr09:16206260..16206284 (25 bp)
GGAGTCCGACAACAGCAACAATTCA
LOC_Os09g26680
OsAffx.29789.3.S1_x_at--369--56710Chr12:13245229..13245518 (25 bp)
GACATACAACAGGATAGCTCTAGCT
NONE
OsAffx.29789.3.S1_x_at--354--578Chr09:16206342..16206366 (25 bp)
ATCCAACGTATGTGTACAACCGTCC
LOC_Os09g26680
OsAffx.29789.3.S1_x_at--906--43710Chr09:16206367..16206391 (25 bp)
CCAAGCTTCTGATTATCCTGCTACT
LOC_Os09g26680
OsAffx.29789.3.S1_x_at--467--856Chr05:5388760..5389120 (25 bp)
ATGGCAAGAGCCTCAGTGTTCCAAC
LOC_Os05g09570
OsAffx.29789.3.S1_x_at--675--1119Chr11:26390581..26390602 (22 bp)
AGTGTTCCAACATATCGCGGTTACC
LOC_Os11g44450
Target Sequence 
GAAAGCCGCCAAAAGCACGTCCATCTAAAAAGGTAAAGGGCAAGGGTCCACGATCGACTAGTGTTGATAGCGATGAAGAG
ACCCAAGGAAGCCCAGAGTACCAAGAGTCCAATGATAGTAGCTCAAGAACTGAAACAGATGACGGCGACGATGATGGTCA
AGGAGGCCAAGGCACTACTAATGTGCCTCCTAGGGGTCACACCCAACAATCAGATCACCACAGCCCCGTTCAATTCACTG
GTGAGGGCGACTTCACTCATGCTACTCAGGACCAGGATCATGGTGCTCCAAGCTCTCAACGAACTACCATTGCACCGGGA
GTCCGACAACAGCAACAATTCAGTGACATACAACAGGATAGCTCTAGCTCATTCAGTGCCTCTAGCTTTGAAAGTGGCTA
TCCAACGTATGTGTACAACCGTCCCCAAGCTTCTGATTATCCTGCTACTACATGGGTGTATGAATGGCAAGAGCCTCAGT
GTTCCAACATATCGCGGTTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29789.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis