Browse Element(s) Details


OsAffx.29831.1.S1_at

Description tigr:9637.m01072
TID=OsAffx.29831.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1340010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g13380OsAffx.17683.1.S1_at11/119+7716496..7719777hypothetical protein
LOC_Os09g13390OsAffx.29830.1.S1_at11/119+7726035..7726335hypothetical protein
LOC_Os09g13400OsAffx.29831.1.S1_at10/119+7740162..7743069expressed protein
LOC_Os09g13400OsAffx.29831.1.S1_s_at3/119+7740162..7743069expressed protein
LOC_Os09g13410Os.51183.1.S1_at11/119+7752372..7754377expressed protein
LOC_Os09g13420OsAffx.6261.1.S1_x_at11/119+7758918..7761038hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29831.1.S1_at--932--3611Chr09:7741400..7741424 (25 bp)
CTTGTGGCACAATCAGGCCTGCTTT
LOC_Os09g13400
OsAffx.29831.1.S1_at--860--2231Chr09:7741392..7741416 (25 bp)
ACAATCAGGCCTGCTTTCCAATCAA
LOC_Os09g13400
OsAffx.29831.1.S1_at--378--891Chr09:7741386..7741410 (25 bp)
AGGCCTGCTTTCCAATCAACATGAC
LOC_Os09g13400
OsAffx.29831.1.S1_at--493--9071Chr09:7741381..7741405 (25 bp)
TGCTTTCCAATCAACATGACACAAG
LOC_Os09g13400
OsAffx.29831.1.S1_at--15--8971Chr09:7741367..7741389 (23 bp)
TGACACAAGATGTATTACGCCAGAC
LOC_Os09g13400
OsAffx.29831.1.S1_at--636--10451NONE
TTACGCCAGACAAGAGCGCGTCACT
NONE
OsAffx.29831.1.S1_at--429--1411Chr09:7740574..7740598 (25 bp)
AGACAAGAGCGCGTCACTCAGCACT
LOC_Os09g13400
OsAffx.29831.1.S1_at--494--2771Chr09:7740570..7740594 (25 bp)
AAGAGCGCGTCACTCAGCACTCAGC
LOC_Os09g13400
OsAffx.29831.1.S1_at--237--1691Chr09:7740551..7740572 (22 bp)
AGCCTCGCCTCGAAGCTACAGGTGA
LOC_Os09g13400
OsAffx.29831.1.S1_at--199--4431Chr09:7740375..7740566 (25 bp)
GCCTCGAAGCTACAGGTGAAACACT
LOC_Os09g13400
OsAffx.29831.1.S1_at--934--1031Chr09:7740362..7740384 (23 bp)
AGGTGAAACACTGAAAGATGGTAAT
LOC_Os09g13400
Target Sequence
CTTGTGGCACAATCAGGCCTGCTTTCCAATCAACATGACACAAGATGTATTACGCCAGACAAGAGCGCGTCACTCAGCAC
TCAGCCTCGCCTCGAAGCTACAGGTGAAACACTGAAAGATGGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29831.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis