Browse Element(s) Details


OsAffx.29854.1.S1_x_at

Description tigr:9637.m01282
TID=OsAffx.29854.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Peroxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1551011/11Peroxidase family protein, expressed
LOC_Os09g155007/11Peroxidase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15470Os.27691.1.S1_x_at4/119+9464788..9470500retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15480Os.14294.1.S1_at11/119+9475481..9477841Ser/Thr-rich protein T10 in DGCR region, putative, expressed
LOC_Os09g15490NANA9+9482798..9483515hypothetical protein
LOC_Os09g15500OsAffx.29854.1.S1_x_at7/119+9485054..9486123Peroxidase family protein
LOC_Os09g15500OsAffx.29854.1.S1_at6/119+9485054..9486123Peroxidase family protein
LOC_Os09g15500Os.28000.1.A1_x_at4/119+9485054..9486123Peroxidase family protein
LOC_Os09g15510OsAffx.29854.1.S1_x_at11/119+9489520..9491543Peroxidase family protein, expressed
LOC_Os09g15510OsAffx.29854.1.S1_at11/119+9489520..9491543Peroxidase family protein, expressed
LOC_Os09g15510Os.28000.1.A1_x_at4/119+9489520..9491543Peroxidase family protein, expressed
LOC_Os09g15520Os.6617.1.S1_s_at11/119+9495345..9496052Oleosin family protein, expressed
LOC_Os09g15530OsAffx.29855.1.S1_at11/119+9496190..9497538hypothetical protein
LOC_Os09g15540Os.56211.1.S1_at11/119+9497903..9499492F-box domain containing protein, expressed
LOC_Os09g15540OsAffx.9167.1.S1_x_at1/119+9497903..9499492F-box domain containing protein, expressed
LOC_Os09g15550Os.56250.1.S1_at11/119+9500360..9501868F-box domain containing protein, expressed
LOC_Os09g15560Os.55706.1.S1_at11/119+9504693..9506076F-box domain containing protein, expressed
LOC_Os09g15570OsAffx.29856.1.S1_at11/119+9510313..9512124F-box domain containing protein, expressed
LOC_Os09g15580OsAffx.30126.2.S1_at11/119+9513235..9516346hypothetical protein
LOC_Os09g15580OsAffx.30126.2.S1_x_at10/119+9513235..9516346hypothetical protein
LOC_Os09g15580Os.16896.1.S1_at5/119+9513235..9516346hypothetical protein
LOC_Os09g15580Os.36979.1.S1_x_at3/119+9513235..9516346hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29854.1.S1_x_at--1148--4652Chr09:9485735..9485759 (25 bp)
GCGTGATCAAGGACAGCCGGCTGTA
LOC_Os09g15500
OsAffx.29854.1.S1_x_at--942--8512Chr09:9485798..9485822 (25 bp)
TGGACCCGTACTACGCGTTCGTGTA
LOC_Os09g15500
OsAffx.29854.1.S1_x_at--374--9892Chr09:9485806..9485830 (25 bp)
TACTACGCGTTCGTGTACAAGACGT
LOC_Os09g15500
OsAffx.29854.1.S1_x_at--9--9852Chr09:9485821..9485845 (25 bp)
TACAAGACGTGGGTGTGCCCCAACG
LOC_Os09g15500
OsAffx.29854.1.S1_x_at--147--7152Chr09:9485869..9485893 (25 bp)
GTCTTCCTCGACGACCAGTGGAGCG
LOC_Os09g15500
OsAffx.29854.1.S1_x_at--180--4672Chr09:9485898..9485922 (25 bp)
GCGGGTGGACAGCAACTACTACAAG
LOC_Os09g15500
OsAffx.29854.1.S1_x_at--741--4572Chr09:9486043..9486067 (25 bp)
GCGCTCATCAAGCTCGGCGAGGTCA
LOC_Os09g15500
OsAffx.29854.1.S1_x_at--54--1151Chr09:9489637..9489661 (25 bp)
AGTCCTGCGCATCCGCCATGCGGGA
LOC_Os09g15510
OsAffx.29854.1.S1_x_at--1048--7793Chr08:27372594..27372933 (25 bp)
GGTCCCGCGCATCCAATATGCGGGA
NONE
OsAffx.29854.1.S1_x_at--996--251Chr09:9489587..9489611 (25 bp)
ATATGCGGGAGCGATCCGGTTCCTG
LOC_Os09g15510
OsAffx.29854.1.S1_x_at--683--1591Chr09:9489578..9489602 (25 bp)
AGCGATCCGGTTCCTGTGTTATTCC
LOC_Os09g15510
Target Sequence 
GCGTGATCAAGGACAGCCGGCTGTACANGTACGGCGGCCGCGCCGGCGCGACGGACCCGGCGCTGGACCCGTACTACGCG
TTCGTGTACAAGACGTGGGTGTGCCCCAACGCGGCGGCGTCCGACGGCAACGTNGTCTTCCTCGACGACCAGTGGAGCGC
GCTGCGGGTGGACAGCAACTACTACAAGCAGCTGCAGCGCCGCCGCGGCGTGCTCCCCTGCGACCAGAACCTCTACGGCG
ACGGCNNNTCGACGNNGTGGATCGTCNACCTGCTCGCCAACNNNTCCGACCTCTTCCCGTCGCTCTTCCCGCAGGCGCTC
ATCAAGCTCGGCGAGGTCAACGTGNTCACCGGAGCTCAGGGAGAGATCCGCAAGGNCNNNNNNNNNNNNNNNNNAAAGGA
CGGAGTGGCAGTCCTGCGCATCCGCCATGCGGGAGAGAGGGGCCGGTCCCGCGCATCCAATATGCGGGAGCGATCCGGTT
CCTGTGTTATTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29854.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis