Browse Element(s) Details


OsAffx.29869.1.S1_at

Description tigr:9637.m01349
TID=OsAffx.29869.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1617011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16130Os.57144.1.S1_at11/119+9838416..9838921expressed protein
LOC_Os09g16140OsAffx.17731.1.S1_at11/119+9842456..9842881hypothetical protein
LOC_Os09g16150OsAffx.29868.2.S1_at11/119+9848245..9849101hypothetical protein
LOC_Os09g16150OsAffx.12311.1.S1_x_at1/119+9848245..9849101hypothetical protein
LOC_Os09g16160OsAffx.17733.1.S1_at11/119+9856201..9859809hypothetical protein
LOC_Os09g16170OsAffx.29869.1.S1_at11/119+9860268..9861866hypothetical protein
LOC_Os09g16180OsAffx.17733.2.S1_at10/119+9863112..9864236hypothetical protein
LOC_Os09g16190OsAffx.17734.1.S1_at9/119+9874701..9875672hypothetical protein
LOC_Os09g16200OsAffx.6294.1.S1_at10/119+9880133..9887172hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29869.1.S1_at--529--911Chr09:9860819..9860843 (25 bp)
AGGCGGCACTGGCTTGGGATGCGGC
LOC_Os09g16170
OsAffx.29869.1.S1_at--401--8371Chr09:9860794..9860818 (25 bp)
GGCGTGGGATGCACCGGCGACAGCG
LOC_Os09g16170
OsAffx.29869.1.S1_at--208--4111Chr09:9860777..9860801 (25 bp)
CGACAGCGTGGAATGCGGCGGCTAT
LOC_Os09g16170
OsAffx.29869.1.S1_at--248--3691Chr09:9860756..9860780 (25 bp)
CTATGGCGTGGGATGCGGAAACAGC
LOC_Os09g16170
OsAffx.29869.1.S1_at--503--9291Chr09:9860549..9860573 (25 bp)
TCCGCACCAAGAACGATCATGCGCT
LOC_Os09g16170
OsAffx.29869.1.S1_at--227--1711Chr09:9860544..9860568 (25 bp)
ACCAAGAACGATCATGCGCTGCCTC
LOC_Os09g16170
OsAffx.29869.1.S1_at--374--2751Chr09:9860541..9860565 (25 bp)
AAGAACGATCATGCGCTGCCTCGTC
LOC_Os09g16170
OsAffx.29869.1.S1_at--133--4172Chr01:12744101..12744121 (21 bp)
CGCCTCACCATCTTGGATATCATGG
NONE
OsAffx.29869.1.S1_at--937--3551Chr09:9860475..9860499 (25 bp)
CATCTTGGATATCATGGCGCACCGG
LOC_Os09g16170
OsAffx.29869.1.S1_at--416--431Chr09:9860474..9860498 (25 bp)
ATCTTGGATATCATGGCGCACCGGT
LOC_Os09g16170
OsAffx.29869.1.S1_at--656--3611Chr09:9860472..9860496 (25 bp)
CTTGGATATCATGGCGCACCGGTGG
LOC_Os09g16170
Target Sequence 
AGGCGGCACTGGCTTGGGATGCGGCGGCGTGGGATGCACCGGCGACAGCGTGGAATGCGGCGGCTATGGCGTGGGATGCG
GAAACAGCGGCGGCGGCGTGGGATGCGGCGGCGGCAGCGTGGGATGCGGCGACGGCAGCGTGGGAAGTGGGATACGGAGG
CGGCGGCGGCTGCACCATGGGATGCGGCGGCGGCAGCGTGGGAAGAGCCGGCGGCGGCGCCTCCGCATCCCGCACCGCCT
CCACTCCCCGTCTCCTCCTCCAAGCCCACCTCCGCACCAAGAACGATCATGCGCTGCCTCGTCGACCTCCTCCCCTCGCC
GCTCTACCTCCCGCGCCGCCTCACCATCTTGGATATCATGGCGCACCGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29869.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis