Browse Element(s) Details


OsAffx.29884.1.S1_at

Description tigr:9637.m01453
TID=OsAffx.29884.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1711011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17050OsAffx.6311.1.S1_at11/119+10450160..10452082hypothetical protein
LOC_Os09g17060OsAffx.17750.1.S1_at11/119+10453365..10453628hypothetical protein
LOC_Os09g17070OsAffx.6312.1.S1_at11/119+10460248..10461402hypothetical protein
LOC_Os09g17080NANA9+10462222..10463181F-box domain containing protein
LOC_Os09g17089NANA9+10467745..10469297NA
LOC_Os09g17100OsAffx.17752.1.S1_at11/119+10472904..10473604hypothetical protein
LOC_Os09g17110OsAffx.29884.1.S1_at11/119+10476590..10481004Protein kinase domain containing protein
LOC_Os09g17120OsAffx.29885.1.S1_at11/119+10486855..10488821hypothetical protein
LOC_Os09g17120Os.27811.1.S1_at1/119+10486855..10488821hypothetical protein
LOC_Os09g17130OsAffx.17753.1.S1_at11/119+10492871..10494993hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29884.1.S1_at--820--851Chr09:10480458..10480482 (25 bp)
ATGGCAGACGACCAAGGCCGTGCTC
LOC_Os09g17110
OsAffx.29884.1.S1_at--450--291Chr09:10480498..10480522 (25 bp)
ATAGACCCAGAGTTCATCACCACGC
LOC_Os09g17110
OsAffx.29884.1.S1_at--1032--4071Chr09:10480529..10480553 (25 bp)
CGAGCGTTCAGTCCGACATCTACAG
LOC_Os09g17110
OsAffx.29884.1.S1_at--1078--1751Chr09:10480593..10480617 (25 bp)
ACCGGTTCTCTTGCAGGAAGGCGCG
LOC_Os09g17110
OsAffx.29884.1.S1_at--135--4171Chr09:10480619..10480643 (25 bp)
CGCCGTTCATGCTGCTGAAGTGGGT
LOC_Os09g17110
OsAffx.29884.1.S1_at--891--8731Chr09:10480652..10480676 (25 bp)
TGTACGGCCGAAACGCGATCCTGGA
LOC_Os09g17110
OsAffx.29884.1.S1_at--635--3431Chr09:10480732..10480756 (25 bp)
CAGATGGAGCGCGTTTTGATCGTCG
LOC_Os09g17110
OsAffx.29884.1.S1_at--471--8671Chr09:10480760..10480784 (25 bp)
TGTGGTGCACACAGCCTGACATGGC
LOC_Os09g17110
OsAffx.29884.1.S1_at--531--6311Chr09:10480828..10480852 (25 bp)
GATGACGCGAAGCTGCCGGATCTCT
LOC_Os09g17110
OsAffx.29884.1.S1_at--864--6411Chr09:10480846..10480870 (25 bp)
GATCTCTGGCCGCAGATGTACATGG
LOC_Os09g17110
OsAffx.29884.1.S1_at--972--5471Chr09:10480890..10480914 (25 bp)
GAACTTCGCGATGGGCGAGTACCGT
LOC_Os09g17110
Target Sequence 
ATGGCAGACGACCAAGGCCGTGCTCGGCACTGCCGGGTACATAGACCCAGAGTTCATCACCACGCGCCGGCCGAGCGTTC
AGTCCGACATCTACAGCTTCGGCATCGTCCTCCTCGAGATCGTCTCCGGCCGGCCACCGGTTCTCTTGCAGGAAGGCGCG
CCGCCGTTCATGCTGCTGAAGTGGGTGTGGAGCCTGTACGGCCGAAACGCGATCCTGGACGCGGCGGACGAGCGCCTCTG
GGCCGCCGGTGGCGGCAAAGAGGACGACGCGCGGCAGATGGAGCGCGTTTTGATCGTCGGGCTGTGGTGCACACAGCCTG
ACATGGCGGATCGTCCGTCCATTCCACAGGCTATGCACGTCCTGCAGTCCGATGACGCGAAGCTGCCGGATCTCTGGCCG
CAGATGTACATGGCCTCGCCGTCGCCGGCGAAGAACTTCGCGATGGGCGAGTACCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis