Browse Element(s) Details


OsAffx.29890.1.A1_at

Description tigr:9637.m01473
TID=OsAffx.29890.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g155501/11Phosphatidylinositol-4-phosphate 5-kinase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15540Os.9942.1.S1_x_at11/113+8525999..8530645HEAT repeat family protein, expressed
LOC_Os03g15540Os.48014.1.S1_x_at11/113+8525999..8530645HEAT repeat family protein, expressed
LOC_Os03g15550Os.51710.1.S1_at11/113+8538046..8541859Phosphatidylinositol-4-phosphate 5-kinase 2, putative, expressed
LOC_Os03g15550OsAffx.29890.1.A1_at1/113+8538046..8541859Phosphatidylinositol-4-phosphate 5-kinase 2, putative, expressed
LOC_Os03g15560Os.22830.1.S1_at7/113+8547498..8550881expressed protein
LOC_Os03g15570Os.15814.1.S1_at8/113+8551931..8556481Mitogen-activated protein kinase 1, putative, expressed
LOC_Os03g15580Os.45877.1.S1_at11/113+8560857..8575663AT hook motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016307molecular_functionphosphatidylinositol phosphate kinase activity
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29890.1.A1_at--671--2931Chr09:10600313..10600337 (25 bp)
AAGGCATCCACGACGCTACGGATAT
NONE
OsAffx.29890.1.A1_at--510--3531Chr09:10600317..10600341 (25 bp)
CATCCACGACGCTACGGATATGCAT
NONE
OsAffx.29890.1.A1_at--115--1871Chr09:10600322..10600346 (25 bp)
ACGACGCTACGGATATGCATCTGGG
NONE
OsAffx.29890.1.A1_at--690--1831Chr09:10600325..10600349 (25 bp)
ACGCTACGGATATGCATCTGGGAGT
NONE
OsAffx.29890.1.A1_at--336--9931Chr09:10600329..10600353 (25 bp)
TACGGATATGCATCTGGGAGTGAGA
NONE
OsAffx.29890.1.A1_at--769--5731Chr09:10600352..10600376 (25 bp)
GACGGTGAGGCCAGGGACAACACCT
NONE
OsAffx.29890.1.A1_at--954--7371Chr09:10600356..10600380 (25 bp)
GTGAGGCCAGGGACAACACCTGCGA
NONE
OsAffx.29890.1.A1_at--173--891Chr09:10600359..10600383 (25 bp)
AGGCCAGGGACAACACCTGCGACAT
NONE
OsAffx.29890.1.A1_at--857--4212Chr09:10600402..10600426 (25 bp)
CCGCAGCTGCAGCGCCAAGGCAATG
NONE
OsAffx.29890.1.A1_at--567--1672Chr10:8103486..8103581 (24 bp)
AGCCCCGCTCTTCCGAATGATGACG
NONE
OsAffx.29890.1.A1_at--628--4811Chr09:10600441..10600465 (25 bp)
GCTCTTCCGAATGATGACGCCGCCG
NONE
Target Sequence 
AAGGCATCCACGACGCTACGGATATGCATCTGGGAGTGAGACGGTGAGGCCAGGGACAACACCTGCGACATCGTCGCCGC
GCCGCTCCGCCGCAGCTGCAGCGCCAAGGCAATGCCGCTGCCAGCCCCGCTCTTCCGAATGATGACGCCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29890.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis