Browse Element(s) Details


OsAffx.29987.1.S1_at

Description tigr:9637.m02003
TID=OsAffx.29987.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2343011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23390OsAffx.29985.1.S1_at11/119+13900842..13901812hypothetical protein
LOC_Os09g23400NANA9+13907220..13908604hypothetical protein
LOC_Os09g23410OsAffx.29986.1.S1_at10/119+13915019..13917896hypothetical protein
LOC_Os09g23420OsAffx.6373.1.S1_at11/119+13918743..13919868hypothetical protein
LOC_Os09g23430OsAffx.29987.1.S1_at11/119+13924466..13924666hypothetical protein
LOC_Os09g23440NANA9+13931139..13931372hypothetical protein
LOC_Os09g23450NANA9+13936074..13936307hypothetical protein
LOC_Os09g23460OsAffx.17858.1.S1_at9/119+13944037..13945492hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29987.1.S1_at--390--4651Chr09:13924496..13924520 (25 bp)
GCGTCGTTGCATGCCGCCGACGGAG
LOC_Os09g23430
OsAffx.29987.1.S1_at--916--3931Chr09:13924561..13924585 (25 bp)
CGGCGGTGATCAGTCGGAGAGCAAG
LOC_Os09g23430
OsAffx.29987.1.S1_at--837--7171Chr09:13924573..13924597 (25 bp)
GTCGGAGAGCAAGGTGGAACATAAA
LOC_Os09g23430
OsAffx.29987.1.S1_at--994--1051Chr09:13924584..13924608 (25 bp)
AGGTGGAACATAAATCCGGCTGCAC
LOC_Os09g23430
OsAffx.29987.1.S1_at--73--8531Chr09:13924587..13924611 (25 bp)
TGGAACATAAATCCGGCTGCACGAA
LOC_Os09g23430
OsAffx.29987.1.S1_at--550--2071Chr09:13924591..13924615 (25 bp)
ACATAAATCCGGCTGCACGAACAAC
LOC_Os09g23430
OsAffx.29987.1.S1_at--312--331Chr09:13924593..13924617 (25 bp)
ATAAATCCGGCTGCACGAACAACGA
LOC_Os09g23430
OsAffx.29987.1.S1_at--513--2271Chr09:13924595..13924619 (25 bp)
AAATCCGGCTGCACGAACAACGATA
LOC_Os09g23430
OsAffx.29987.1.S1_at--960--3031Chr09:13924596..13924620 (25 bp)
AATCCGGCTGCACGAACAACGATAA
LOC_Os09g23430
OsAffx.29987.1.S1_at--968--9271Chr09:13924598..13924622 (25 bp)
TCCGGCTGCACGAACAACGATAACA
LOC_Os09g23430
OsAffx.29987.1.S1_at--694--4751Chr09:13924602..13924626 (25 bp)
GCTGCACGAACAACGATAACACACC
LOC_Os09g23430
Target Sequence 
GCGTCGTTGCATGCCGCCGACGGAGCCGCGGCGGCGCCGCGCCGCGTGCTGGGAGCTGACGGCGGCGGCGGTGATCAGTC
GGAGAGCAAGGTGGAACATAAATCCGGCTGCACGAACAACGATAACACACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis