Browse Element(s) Details


OsAffx.29994.1.S1_s_at

Description tigr:9637.m02033
TID=OsAffx.29994.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to DNA binding protein PF1 - rice
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2373011/11AT hook motif family protein, expressed
LOC_Os08g331902/11linker histone H1 and H5 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23690Os.17618.2.S1_x_at1/119+14083215..14086555UBX domain containing protein, expressed
LOC_Os09g23690Os.17618.1.S1_at1/119+14083215..14086555UBX domain containing protein, expressed
LOC_Os09g23700NANA9+14087505..14088130hypothetical protein
LOC_Os09g23710OsAffx.17863.1.S1_at11/119+14091584..14092186hypothetical protein
LOC_Os09g23720Os.22695.1.S1_s_at11/119+14094778..14098856expressed protein
LOC_Os09g23730OsAffx.29994.1.S1_s_at11/119+14105184..14106336AT hook motif family protein, expressed
LOC_Os09g23730Os.49541.1.S1_at11/119+14105184..14106336AT hook motif family protein, expressed
LOC_Os09g23740Os.19425.1.S1_at11/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23740OsAffx.17864.1.S1_x_at10/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23740OsAffx.17864.1.S1_at8/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23750OsAffx.6376.1.S1_at10/119+14124906..14126182hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006334biological_processnucleosome assembly
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0000786cellular_componentnucleosome
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29994.1.S1_s_at--542--4451Chr09:14106226..14106250 (25 bp)
GCCTCACTCCCATGGCGACCGAGGA
LOC_Os09g23730
OsAffx.29994.1.S1_s_at--1081--3351Chr09:14106075..14106177 (25 bp)
CACCCCGTCTTACCCGGAGATGATA
LOC_Os09g23730
OsAffx.29994.1.S1_s_at--597--4231Chr09:14106071..14106173 (25 bp)
CCGTCTTACCCGGAGATGATACTGG
LOC_Os09g23730
OsAffx.29994.1.S1_s_at--384--7111Chr09:14106069..14106171 (25 bp)
GTCTTACCCGGAGATGATACTGGCG
LOC_Os09g23730
OsAffx.29994.1.S1_s_at--982--4192Chr09:14106063..14106165 (25 bp)
CCCGGAGATGATACTGGCGGCGATC
LOC_Os09g23730
OsAffx.29994.1.S1_s_at--154--6391Chr09:14106042..14106066 (25 bp)
GATCGAGGCGCTGGACGACAGGAAC
LOC_Os09g23730
OsAffx.29994.1.S1_s_at--719--891Chr09:14106037..14106061 (25 bp)
AGGCGCTGGACGACAGGAACGGGTC
LOC_Os09g23730
OsAffx.29994.1.S1_s_at--1023--2211Chr09:14106010..14106034 (25 bp)
ACAAGACGGCGATCTCGCAGCACAT
LOC_Os09g23730
OsAffx.29994.1.S1_s_at--883--1391Chr09:14106007..14106031 (25 bp)
AGACGGCGATCTCGCAGCACATCGA
LOC_Os09g23730
OsAffx.29994.1.S1_s_at--844--3931Chr09:14106004..14106028 (25 bp)
CGGCGATCTCGCAGCACATCGAGGG
LOC_Os09g23730
OsAffx.29994.1.S1_s_at--592--2752Chr09:14105888..14105912 (25 bp)
AAGAACAACTACTTCCGCGGCGACG
LOC_Os09g23730
Target Sequence 
GCCTCACTCCCATGGCGACCGAGGAGGACGCGTCGACCATGGCGGCGGCCGAGGCGGACCCCAAGCCCGCCGCCACCCCG
TCTTACCCGGAGATGATACTGGCGGCGATCGAGGCGCTGGACGACAGGAACGGGTCGAACAAGACGGCGATCTCGCAGCA
CATCGAGGGGAAGTACGAGGGGCTCCTCCCCCCCGCGCACCCGTCGCTCCTCACAGCGCACCTCGCCCGCATGAAGAAGA
ACGGCGAGCTCGCCTTCTCCAAGAACAACTACTTCCGCGGCGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29994.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis