Browse Element(s) Details


OsAffx.30032.3.S1_at

Description tigr:9635.m02996
TID=OsAffx.30032.3
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3063011/11hypothetical protein
LOC_Os07g295401/11retrotransposon protein, putative, unclassified
LOC_Os05g124201/11hypothetical protein
LOC_Os08g179601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30600OsAffx.5485.1.S1_at11/117+18104531..18109557Male sterility protein
LOC_Os07g30610Os.51026.1.S1_x_at1/117+18112018..18113466UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g30620Os.51026.1.S1_x_at11/117+18122857..18124650UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g30620Os.51026.1.S1_at11/117+18122857..18124650UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g30630OsAffx.30032.3.S1_at11/117+18127077..18127925hypothetical protein
LOC_Os07g30630OsAffx.30032.1.S1_at2/117+18127077..18127925hypothetical protein
LOC_Os07g30640OsAffx.5486.1.S1_at9/117+18131662..18133654ubiquitin fusion protein, putative, expressed
LOC_Os07g30640Os.16404.1.S1_at1/117+18131662..18133654ubiquitin fusion protein, putative, expressed
LOC_Os07g30650NANA7+18135064..18138430retrotransposon protein, putative, unclassified
LOC_Os07g30660NANA7+18138785..18141974hypothetical protein
LOC_Os07g30670Os.52588.1.S1_at11/117+18147391..181490012Fe-2S iron-sulfur cluster binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30032.3.S1_at--517--3311Chr07:18127688..18127712 (25 bp)
CACTTGGTCGCAACCAACTTTGGCA
LOC_Os07g30630
OsAffx.30032.3.S1_at--33--6792Chr11:27404426..27404449 (24 bp)
GTTATTCCGAATCGTGGTTCTGCGA
NONE
OsAffx.30032.3.S1_at--192--5251Chr07:18127733..18127757 (25 bp)
GAATCGTGGTTCTGCGATTTCTCAG
LOC_Os07g30630
OsAffx.30032.3.S1_at--991--7891Chr07:18127740..18127764 (25 bp)
GGTTCTGCGATTTCTCAGTGTGACG
LOC_Os07g30630
OsAffx.30032.3.S1_at--188--4631Chr07:18127746..18127770 (25 bp)
GCGATTTCTCAGTGTGACGGGTCAG
LOC_Os07g30630
OsAffx.30032.3.S1_at--831--10311Chr07:18127750..18127774 (25 bp)
TTTCTCAGTGTGACGGGTCAGAGTC
LOC_Os07g30630
OsAffx.30032.3.S1_at--190--3438Chr12:7365904..7365928 (25 bp)
CAGAGTCCAGGAGGCTTCGGATCGT
NONE
OsAffx.30032.3.S1_at--953--4112Chr07:18127813..18127837 (25 bp)
CGCATCCGACCTTGGCAAGTATAAA
LOC_Os07g30630
OsAffx.30032.3.S1_at--959--554Chr07:18127845..18127869 (25 bp)
ATCCTCTTGCTGCTCGCAGCTAGTT
LOC_Os07g30630
OsAffx.30032.3.S1_at--684--4117Chr12:7366112..7366135 (24 bp)
CGCAGCTAGTTACCCTCTTGTGTTT
NONE
OsAffx.30032.3.S1_at--258--4195Chr10:6648599..6648623 (25 bp)
CCCTCTTGTGTTTCGGTTTACACTG
NONE
Target Sequence 
CACTTGGTCGCAACCAACTTTGGCAGGTATAAAGCTAGTTATTCCGAATCGTGGTTCTGCGATTTCTCAGTGTGACGGGT
CAGAGTCCAGGAGGCTTCGGATCGTTCTCACCCTCACCACTTGGTCGCATCCGACCTTGGCAAGTATAAAGCTAGTTATC
CTCTTGCTGCTCGCAGCTAGTTACCCTCTTGTGTTTCGGTTTACACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30032.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis