Browse Element(s) Details


Os.52588.1.S1_at

Description gb:AK068191.1
DB_XREF= gi:32978209
TID=Os.52588.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52588 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013135M05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013135M05, full insert sequence.
FL= gb:AK068191.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3067011/112Fe-2S iron-sulfur cluster binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30620Os.51026.1.S1_x_at11/117+18122857..18124650UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g30620Os.51026.1.S1_at11/117+18122857..18124650UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g30630OsAffx.30032.3.S1_at11/117+18127077..18127925hypothetical protein
LOC_Os07g30630OsAffx.30032.1.S1_at2/117+18127077..18127925hypothetical protein
LOC_Os07g30640OsAffx.5486.1.S1_at9/117+18131662..18133654ubiquitin fusion protein, putative, expressed
LOC_Os07g30640Os.16404.1.S1_at1/117+18131662..18133654ubiquitin fusion protein, putative, expressed
LOC_Os07g30650NANA7+18135064..18138430retrotransposon protein, putative, unclassified
LOC_Os07g30660NANA7+18138785..18141974hypothetical protein
LOC_Os07g30670Os.52588.1.S1_at11/117+18147391..181490012Fe-2S iron-sulfur cluster binding domain containing protein, expressed
LOC_Os07g30680OsAffx.16498.1.S1_at11/117+18154240..18155085hypothetical protein
LOC_Os07g30690Os.51026.1.S1_x_at1/117+18155609..18157081UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g30700NANA7+18166574..18173396transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52588.1.S1_at--276--5671Chr07:18147948..18147972 (25 bp)
GACATCATGCTCGACAACTACATCG
LOC_Os07g30670
Os.52588.1.S1_at--587--9511Chr07:18147976..18148102 (25 bp)
TCTACGGGCCTTACGATAAGCTTCT
LOC_Os07g30670
Os.52588.1.S1_at--964--9791Chr07:18148094..18148118 (25 bp)
TAAGCTTCTGCTCAACTGCGAGGGA
LOC_Os07g30670
Os.52588.1.S1_at--484--8311Chr07:18148450..18148474 (25 bp)
GGCTACTGTCGGCAATCCAGATTCA
LOC_Os07g30670
Os.52588.1.S1_at--148--1311Chr07:18148718..18148742 (25 bp)
AGATGGTCATTCAGCAATTGCCGGA
LOC_Os07g30670
Os.52588.1.S1_at--1143--3831Chr07:18148771..18148795 (25 bp)
CTGAATTTTAACTAGCGCTGCTGTG
LOC_Os07g30670
Os.52588.1.S1_at--91--1651Chr07:18148784..18148808 (25 bp)
AGCGCTGCTGTGTGGCGGCAATACA
LOC_Os07g30670
Os.52588.1.S1_at--444--6911Chr07:18148809..18148833 (25 bp)
GTAGATTAATTTCACCGACCATGGA
LOC_Os07g30670
Os.52588.1.S1_at--525--6011Chr07:18148842..18148866 (25 bp)
GAGAGAGCCTAGCACATGATCAGGA
LOC_Os07g30670
Os.52588.1.S1_at--4--2251Chr07:18148915..18148939 (25 bp)
AAATTGTATACGTCTCCTGTAGCTA
LOC_Os07g30670
Os.52588.1.S1_at--795--7151Chr07:18148926..18148950 (25 bp)
GTCTCCTGTAGCTACCAAATGGTCA
LOC_Os07g30670
Target Sequence 
GACATCATGCTCGACAACTACATCGACCTCTACGGGCCTTACGATAAGCTTCTGCTCAACTGCGAGGGAGGTGGANAGTG
CGGGACCTGCATCGTCGAGGTAGTTGAAGGCGGTGAACTGCTTTCCCCCAAAACTGATGTTGAGAAGGAATTGCTGAAAA
GGAAACCAAAGACATGGAGATTGGCGTGCCAGGCTACTGTCGGCAATCCAGATTCAACTGGACAGATGGTCATTCAGCAA
TTGCCGGAGTGGAAGATACATGAGTGGGACAAGTAGCTGAATTTTAACTAGCGCTGCTGTGTGGCGGCAATACAGTAGAT
TAATTTCACCGACCATGGAGAAAAAGAGAGAGAGCCTAGCACATGATCAGGAGAAGAAACATTGGAAGACGATTAATGCT
GTACATCCAAACTCCATGTAAAATTGTATACGTCTCCTGTAGCTACCAAATGGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52588.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis