Browse Element(s) Details


Os.16404.1.S1_at

Description gb:BI802695
DB_XREF= gi:16575399
DB_XREF=H087B11
CLONE=H087B11
TID=Os.16404.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.16404 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g306401/11ubiquitin fusion protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30600OsAffx.5485.1.S1_at11/117+18104531..18109557Male sterility protein
LOC_Os07g30610Os.51026.1.S1_x_at1/117+18112018..18113466UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g30620Os.51026.1.S1_x_at11/117+18122857..18124650UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g30620Os.51026.1.S1_at11/117+18122857..18124650UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g30630OsAffx.30032.3.S1_at11/117+18127077..18127925hypothetical protein
LOC_Os07g30630OsAffx.30032.1.S1_at2/117+18127077..18127925hypothetical protein
LOC_Os07g30640OsAffx.5486.1.S1_at9/117+18131662..18133654ubiquitin fusion protein, putative, expressed
LOC_Os07g30640Os.16404.1.S1_at1/117+18131662..18133654ubiquitin fusion protein, putative, expressed
LOC_Os07g30650NANA7+18135064..18138430retrotransposon protein, putative, unclassified
LOC_Os07g30660NANA7+18138785..18141974hypothetical protein
LOC_Os07g30670Os.52588.1.S1_at11/117+18147391..181490012Fe-2S iron-sulfur cluster binding domain containing protein, expressed
LOC_Os07g30680OsAffx.16498.1.S1_at11/117+18154240..18155085hypothetical protein
LOC_Os07g30690Os.51026.1.S1_x_at1/117+18155609..18157081UDP-glucoronosyl and UDP-glucosyl transferase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006512biological_processubiquitin cycle
GO:0016567biological_processprotein ubiquitination
GO:0042787biological_processprotein ubiquitination during ubiquitin-dependent protein catabolism
GO:0005622cellular_componentintracellular
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16404.1.S1_at--4--9371Chr06:6783744..6783768 (25 bp)
TCGAAGCCCGCTTGGTCTATGTGGT
NONE
Os.16404.1.S1_at--43--4211Chr06:6783750..6783774 (25 bp)
CCCGCTTGGTCTATGTGGTGGATTA
NONE
Os.16404.1.S1_at--159--6935Chr06:6783776..6783800 (25 bp)
GTAGTAGTACTGTACTCCCTCCGTT
NONE
Os.16404.1.S1_at--974--9291Chr06:6783801..6783825 (25 bp)
TCCCATAATATTCCATCAATTTCAT
NONE
Os.16404.1.S1_at--1157--9731Chr06:6783816..6783840 (25 bp)
TCAATTTCATGATGTATGTTCCATT
NONE
Os.16404.1.S1_at--384--731Chr06:6783831..6783855 (25 bp)
ATGTTCCATTTTCACATGTCCCTCT
NONE
Os.16404.1.S1_at--608--171Chr06:6783838..6783862 (25 bp)
ATTTTCACATGTCCCTCTCATTGTC
NONE
Os.16404.1.S1_at--494--771Chr06:6783846..6783870 (25 bp)
ATGTCCCTCTCATTGTCATTCTCTT
NONE
Os.16404.1.S1_at--573--9591Chr06:6783855..6783879 (25 bp)
TCATTGTCATTCTCTTCCACTTCCA
NONE
Os.16404.1.S1_at--815--2031Chr06:6783873..6783897 (25 bp)
ACTTCCACCCAGCAGGCTTAAGCAG
NONE
Os.16404.1.S1_at--260--4351Chr06:6783881..6783905 (25 bp)
CCAGCAGGCTTAAGCAGGCTCCGGG
NONE
Target Sequence 
TCGAAGCCCGCTTGGTCTATGTGGTGGATTATGTAGTAGTACTGTACTCCCTCCGTTTCCCATAATATTCCATCAATTTC
ATGATGTATGTTCCATTTTCACATGTCCCTCTCATTGTCATTCTCTTCCACTTCCACCCAGCAGGCTTAAGCAGGCTCCG
GG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis