Browse Element(s) Details


OsAffx.5486.1.S1_at

Description tigr:9635.m02997
TID=OsAffx.5486.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ribosomal L40e family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g306409/11ubiquitin fusion protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30600OsAffx.5485.1.S1_at11/117+18104531..18109557Male sterility protein
LOC_Os07g30610Os.51026.1.S1_x_at1/117+18112018..18113466UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g30620Os.51026.1.S1_x_at11/117+18122857..18124650UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g30620Os.51026.1.S1_at11/117+18122857..18124650UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g30630OsAffx.30032.3.S1_at11/117+18127077..18127925hypothetical protein
LOC_Os07g30630OsAffx.30032.1.S1_at2/117+18127077..18127925hypothetical protein
LOC_Os07g30640OsAffx.5486.1.S1_at9/117+18131662..18133654ubiquitin fusion protein, putative, expressed
LOC_Os07g30640Os.16404.1.S1_at1/117+18131662..18133654ubiquitin fusion protein, putative, expressed
LOC_Os07g30650NANA7+18135064..18138430retrotransposon protein, putative, unclassified
LOC_Os07g30660NANA7+18138785..18141974hypothetical protein
LOC_Os07g30670Os.52588.1.S1_at11/117+18147391..181490012Fe-2S iron-sulfur cluster binding domain containing protein, expressed
LOC_Os07g30680OsAffx.16498.1.S1_at11/117+18154240..18155085hypothetical protein
LOC_Os07g30690Os.51026.1.S1_x_at1/117+18155609..18157081UDP-glucoronosyl and UDP-glucosyl transferase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006512biological_processubiquitin cycle
GO:0016567biological_processprotein ubiquitination
GO:0042787biological_processprotein ubiquitination during ubiquitin-dependent protein catabolism
GO:0005622cellular_componentintracellular
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5486.1.S1_at--279--10711Chr07:18133595..18133619 (25 bp)
TTGCGAGATCCACGTCTCTGCAAGA
LOC_Os07g30640
OsAffx.5486.1.S1_at--729--1291Chr07:18133590..18133614 (25 bp)
AGATCCACGTCTCTGCAAGATGCAG
LOC_Os07g30640
OsAffx.5486.1.S1_at--1150--4831Chr07:18133136..18133160 (25 bp)
GCTACCCGATGATCGAGCCCAACCT
LOC_Os07g30640
OsAffx.5486.1.S1_at--828--4531Chr07:18133107..18133131 (25 bp)
GCCCTCGCCCGCAGCAAGATGGAGA
LOC_Os07g30640
OsAffx.5486.1.S1_at--1121--3791Chr07:18133104..18133128 (25 bp)
CTCGCCCGCAGCAAGATGGAGAAGA
LOC_Os07g30640
OsAffx.5486.1.S1_at--352--9871Chr07:18132926..18132950 (25 bp)
TTCCCTACAAGGCTACCAACTGTCG
LOC_Os07g30640
OsAffx.5486.1.S1_at--512--3211Chr07:18132919..18132943 (25 bp)
CAAGGCTACCAACTGTCGCAAGAAG
LOC_Os07g30640
OsAffx.5486.1.S1_at--465--8311Chr07:18132916..18132940 (25 bp)
GGCTACCAACTGTCGCAAGAAGAAA
LOC_Os07g30640
OsAffx.5486.1.S1_at--479--2751Chr07:18132898..18132921 (24 bp)
AAGAAATGCGGCCACACCAACGAGC
LOC_Os07g30640
OsAffx.5486.1.S1_at--715--611NONE
ATGCGGCCACACCAACGAGCTGAGG
NONE
OsAffx.5486.1.S1_at--979--4391NONE
GCCACACCAACGAGCTGAGGCCAAA
NONE
Target Sequence 
TTGCGAGATCCACGTCTCTGCAAGATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTCGAGGTCGAGAG
CAGCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCGCCGGACCAGCAGCGGCTGATCTTCG
CCGGGAAGCAGCTGGAGGACGGCCGGACGCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTTCGC
CTCCGCGGCGGCGGCCGCCCGGGCTACCCGATGATCGAGCCCAACCTCCTCGCCCTCGCCCGCAGCAAGATGGAGAAGAA
GATGATCTGCCGCAAGTGCTACGCGCGCCTTCCCTACAAGGCTACCAACTGTCGCAAGAAGAAATGCGGCCACACCAACG
AGCTGAGGCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis