Browse Element(s) Details


OsAffx.16498.1.S1_at

Description tigr:9635.m03001
TID=OsAffx.16498.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3068011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30640OsAffx.5486.1.S1_at9/117+18131662..18133654ubiquitin fusion protein, putative, expressed
LOC_Os07g30640Os.16404.1.S1_at1/117+18131662..18133654ubiquitin fusion protein, putative, expressed
LOC_Os07g30650NANA7+18135064..18138430retrotransposon protein, putative, unclassified
LOC_Os07g30660NANA7+18138785..18141974hypothetical protein
LOC_Os07g30670Os.52588.1.S1_at11/117+18147391..181490012Fe-2S iron-sulfur cluster binding domain containing protein, expressed
LOC_Os07g30680OsAffx.16498.1.S1_at11/117+18154240..18155085hypothetical protein
LOC_Os07g30690Os.51026.1.S1_x_at1/117+18155609..18157081UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g30700NANA7+18166574..18173396transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g30710NANA7+18178865..18179562retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16498.1.S1_at--619--8591Chr07:18154824..18154848 (25 bp)
TGGTCCAGAAGGTTGGCTAGCCCTT
LOC_Os07g30680
OsAffx.16498.1.S1_at--812--6591Chr07:18154835..18154859 (25 bp)
GTTGGCTAGCCCTTTTGGACAAGGC
LOC_Os07g30680
OsAffx.16498.1.S1_at--61--8151Chr07:18154851..18154875 (25 bp)
GGACAAGGCCAGACGGACCAAGCTC
LOC_Os07g30680
OsAffx.16498.1.S1_at--126--2671Chr07:18154870..18154894 (25 bp)
AAGCTCCAGGGCCAAATCGGTCCAG
LOC_Os07g30680
OsAffx.16498.1.S1_at--207--3291Chr07:18154882..18154906 (25 bp)
CAAATCGGTCCAGGGATGTCCAAAA
LOC_Os07g30680
OsAffx.16498.1.S1_at--934--751Chr07:18154897..18154921 (25 bp)
ATGTCCAAAAGCTATGTCCGGTCCC
LOC_Os07g30680
OsAffx.16498.1.S1_at--230--10111Chr07:18154909..18154933 (25 bp)
TATGTCCGGTCCCAGGGCATATATG
LOC_Os07g30680
OsAffx.16498.1.S1_at--668--4951Chr07:18154925..18154949 (25 bp)
GCATATATGGCCACATGGGTGCCTT
LOC_Os07g30680
OsAffx.16498.1.S1_at--651--3491Chr07:18154938..18154962 (25 bp)
CATGGGTGCCTTTATAAGTCTTTTT
LOC_Os07g30680
OsAffx.16498.1.S1_at--511--3171Chr07:18154993..18155017 (25 bp)
AATTGTTATCTAGCTGTTCTGACAG
LOC_Os07g30680
OsAffx.16498.1.S1_at--695--7331Chr07:18155017..18155041 (25 bp)
GTGACAAACAAATGTTGCTTCCTTA
LOC_Os07g30680
Target Sequence 
TGGTCCAGAAGGTTGGCTAGCCCTTTTGGACAAGGCCAGACGGACCAAGCTCCAGGGCCAAATCGGTCCAGGGATGTCCA
AAAGCTATGTCCGGTCCCAGGGCATATATGGCCACATGGGTGCCTTTATAAGTCTTTTTTTCTCAAAATTAGATGACACG
AGAGATGATAATTGTTATCTAGCTGTTCTGACAGTGACAAACAAATGTTGCTTCCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis