Browse Element(s) Details


OsAffx.30035.1.S1_x_at

Description tigr:9637.m02286
TID=OsAffx.30035.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=gene_id:MUA2.5
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2626011/11AAA-type ATPase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26220Os.14491.2.S1_x_at3/119+15842391..15844601transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g26220Os.47463.1.S1_x_at3/119+15842391..15844601transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g26230NANA9+15845063..15847398transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g26240NANA9+15848808..15856672transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g26250OsAffx.4557.1.S1_s_at1/119+15861573..15861910hypothetical protein
LOC_Os09g26260OsAffx.30035.1.S1_at11/119+15867459..15869030AAA-type ATPase family protein, putative, expressed
LOC_Os09g26260OsAffx.30035.1.S1_x_at11/119+15867459..15869030AAA-type ATPase family protein, putative, expressed
LOC_Os09g26270OsAffx.6405.1.S1_at11/119+15873527..15875552hypothetical protein
LOC_Os09g26270OsAffx.31003.1.S1_x_at1/119+15873527..15875552hypothetical protein
LOC_Os09g26280NANA9+15879528..15880667transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g26290NANA9+15887896..15889073hypothetical protein
LOC_Os09g26300Os.6003.1.S1_x_at3/119+15890789..15891986hypro1, putative, expressed
LOC_Os09g26300Os.5646.1.S1_at2/119+15890789..15891986hypro1, putative, expressed
LOC_Os09g26300OsAffx.3068.1.S1_x_at1/119+15890789..15891986hypro1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30035.1.S1_x_at--201--4291Chr09:15867942..15867966 (25 bp)
CCTCTGGTCGTGCTGCGGCTCGGAG
LOC_Os09g26260
OsAffx.30035.1.S1_x_at--113--3951Chr09:15867927..15867951 (25 bp)
CGGCTCGGAGCGCATCTTCGTCTTC
LOC_Os09g26260
OsAffx.30035.1.S1_x_at--277--5671Chr09:15867848..15867872 (25 bp)
GACATGCACATCTTCATGAGCTACT
LOC_Os09g26260
OsAffx.30035.1.S1_x_at--881--10531Chr09:15867836..15867860 (25 bp)
TTCATGAGCTACTGCACGTTCCCGG
LOC_Os09g26260
OsAffx.30035.1.S1_x_at--258--9731Chr09:15867808..15867832 (25 bp)
TCAAGATCCTCCTCCGGAACTACCT
LOC_Os09g26260
OsAffx.30035.1.S1_x_at--1138--1031Chr09:15867676..15867700 (25 bp)
AGGTGCTGATCAAGAACCGCAGGAA
LOC_Os09g26260
OsAffx.30035.1.S1_x_at--1138--7291Chr09:15867674..15867698 (25 bp)
GTGCTGATCAAGAACCGCAGGAACG
LOC_Os09g26260
OsAffx.30035.1.S1_x_at--967--1911Chr09:15867652..15867676 (25 bp)
ACGGGCGCGAGCAAGCCATGGAACA
LOC_Os09g26260
OsAffx.30035.1.S1_x_at--1018--2651Chr09:15867640..15867664 (25 bp)
AAGCCATGGAACAGCTCCTCGAGGT
LOC_Os09g26260
OsAffx.30035.1.S1_x_at--386--851Chr09:15867635..15867659 (25 bp)
ATGGAACAGCTCCTCGAGGTGCTCA
LOC_Os09g26260
OsAffx.30035.1.S1_x_at--425--8171Chr09:15867633..15867657 (25 bp)
GGAACAGCTCCTCGAGGTGCTCAAG
LOC_Os09g26260
Target Sequence 
CCTCTGGTCGTGCTGCGGCTCGGAGCGCATCTTCGTCTTCACCACCAACCACATCGAGAAGCTCGACCCGGCGCTGCTCC
GCTCCGGCCGCATGGACATGCACATCTTCATGAGCTACTGCACGTTCCCGGCGCTCAAGATCCTCCTCCGGAACTACCTC
GACGACGACTCCTCCGCCTCCTCCTCCTCCGCTGCAGCCGCCGCCACCATGGCCGGGCTGGAGACGTGGATCGACGCGGC
GGAGATCACGCCGGCGGACGTGAGCGAGGTGCTGATCAAGAACCGCAGGAACGGGCGCGAGCAAGCCATGGAACAGCTCC
TCGAGGTGCTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30035.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis