Browse Element(s) Details


OsAffx.30040.1.S1_at

Description tigr:9637.m02313
TID=OsAffx.30040.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g265107/11hypothetical protein
LOC_Os03g252701/11pyrrolidone-carboxylate peptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26470OsAffx.17910.1.S1_at11/119+15990280..15995928IBR domain containing protein, expressed
LOC_Os09g26480OsAffx.17911.1.S1_at11/119+16001196..16002357hypothetical protein
LOC_Os09g26490OsAffx.6406.1.S1_at11/119+16008645..16009892esterase, putative
LOC_Os09g26500OsAffx.30039.1.S1_at11/119+16011760..16014413serine hydrolase, putative
LOC_Os09g26500OsAffx.30039.2.S1_s_at11/119+16011760..16014413serine hydrolase, putative
LOC_Os09g26510OsAffx.30040.1.S1_at7/119+16016089..16016752hypothetical protein
LOC_Os09g26520OsAffx.17912.1.S1_at11/119+16022741..16027615hypothetical protein
LOC_Os09g26530OsAffx.30041.1.S1_at11/119+16029133..16031188expressed protein
LOC_Os09g26540Os.54295.1.S1_at10/119+16038121..16044462expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004219molecular_functionpyroglutamyl-peptidase I activity
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30040.1.S1_at--350--6631Chr09:16016130..16016154 (25 bp)
GTTGTTCCACCGCTACGCGGAGTCA
LOC_Os09g26510
OsAffx.30040.1.S1_at--582--9191Chr09:16016253..16016277 (25 bp)
TCCGGTGGGTGGCTTCCCGTCACAC
LOC_Os09g26510
OsAffx.30040.1.S1_at--362--7091Chr09:16016271..16016295 (25 bp)
GTCACACCGTCCAGTACCCTTAGGT
LOC_Os09g26510
OsAffx.30040.1.S1_at--56--9231Chr09:16016280..16016304 (25 bp)
TCCAGTACCCTTAGGTGGCCAACCA
LOC_Os09g26510
OsAffx.30040.1.S1_at--942--10051Chr09:16016291..16016315 (25 bp)
TAGGTGGCCAACCACGCCACATGTT
LOC_Os09g26510
OsAffx.30040.1.S1_at--128--3291Chr09:16016350..16016374 (25 bp)
CACAACTTGAAGGTACGGCTCGGCG
LOC_Os09g26510
OsAffx.30040.1.S1_at--970--951Chr09:16016402..16016425 (24 bp)
AGGACGAAGGCATCGACATCGAAGA
LOC_Os09g26510
OsAffx.30040.1.S1_at--1048--5351Chr09:16017760..16017782 (23 bp)
GAAGAAGCAATCAGTTTTCGACGAA
NONE
OsAffx.30040.1.S1_at--1099--6791Chr09:16017771..16017795 (25 bp)
GTTTTCGACGAAAATTCATGGCTTT
NONE
OsAffx.30040.1.S1_at--924--8292Chr09:16017790..16017814 (25 bp)
GGCTTTCAATTATATCGGTGTTCCT
NONE
OsAffx.30040.1.S1_at--969--3171Chr09:16017796..16017820 (25 bp)
CAATTATATCGGTGTTCCTACTCTC
NONE
Target Sequence 
GTTGTTCCACCGCTACGCGGAGTCACTCGCCGCGCGCGCCGCGGCAGTCGCCGTCTCCTTCGACTACCGCGTCGCGCCGG
AGCACCCCTGTGCCCGCGGCTTACGACGACGCGTGGGCGGCGCTCCGGTGGGTGGCTTCCCGTCACACCGTCCAGTACCC
TTAGGTGGCCAACCACGCCACATGTTCCTCGCCGGCGAGAGCGCCGGCGCCAACATCGTGCACAACTTGAAGGTACGGCT
CGGCGCCTCCCGCAGTGGCGCCGGCGGCGGCGAGGACGAAGGCATCGACATCGAAGAAGCAATCAGTTTTCGACGAAAAT
TCATGGCTTTCAATTATATCGGTGTTCCTACTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30040.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis