Browse Element(s) Details


OsAffx.30042.1.S1_x_at

Description tigr:9637.m02322
TID=OsAffx.30042.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=similar to late embryogenesis abundant proteins
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g265708/11CAAX amino terminal protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26554Os.53944.1.A1_at11/119+16073906..16077408expressed protein
LOC_Os09g26554Os.53944.1.A1_s_at11/119+16073906..16077408expressed protein
LOC_Os09g26560Os.6268.1.S1_at10/119+16077812..16083119expressed protein
LOC_Os09g26570Os.50813.1.S1_at9/119+16092497..16095482CAAX amino terminal protease family protein, expressed
LOC_Os09g26570OsAffx.30042.1.S1_x_at8/119+16092497..16095482CAAX amino terminal protease family protein, expressed
LOC_Os09g26580NANA9+16096520..16099873hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008487molecular_functionprenyl-dependent CAAX protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30042.1.S1_x_at--959--1571Chr09:16094149..16094173 (25 bp)
AGCTCTTCGTGCAGGGTCATATTCA
LOC_Os09g26570
OsAffx.30042.1.S1_x_at--540--8951Chr09:16094178..16094202 (25 bp)
TGACTAGGCCACTTGATCTTCTCAA
LOC_Os09g26570
OsAffx.30042.1.S1_x_at--746--7011Chr09:16094216..16094240 (25 bp)
GTACTATTGCTAGCTCTCAGAGGAT
LOC_Os09g26570
OsAffx.30042.1.S1_x_at--223--6951Chr09:16094276..16094300 (25 bp)
GTAGTTTTCAGATCATGGCTTCCAG
LOC_Os09g26570
OsAffx.30042.1.S1_x_at--102--2831Chr09:16094304..16094328 (25 bp)
AAGTTGCTGTTGACCTTGGCTACTA
LOC_Os09g26570
OsAffx.30042.1.S1_x_at--768--6651Chr09:16094351..16094375 (25 bp)
GTTGCATTTTCTCTTATTCACCGGT
LOC_Os09g26570
OsAffx.30042.1.S1_x_at--266--911Chr09:16094947..16094971 (25 bp)
AGGCTTCTTGCTACTTTCACTAGTT
LOC_Os09g26570
OsAffx.30042.1.S1_x_at--706--1071Chr09:16094998..16095022 (25 bp)
AGGGAAGCTTGCTGCACCTATTGGC
LOC_Os09g26570
OsAffx.30042.1.S1_x_at--265--4371Chr09:16095080..16095516 (25 bp)
TCCAAACCTGTTGTAACCTTCCAAT
NONE
OsAffx.30042.1.S1_x_at--836--6491Chr09:16095521..16095545 (25 bp)
GATAGTCTCGTCCATTGATTACAAG
NONE
OsAffx.30042.1.S1_x_at--786--2811Chr09:16095641..16095665 (25 bp)
AAGTTGTTGGATATGCCCTGGTAGA
NONE
Target Sequence 
AGCTCTTCGTGCAGGGTCATATTCATTCGTGACTAGGCCACTTGATCTTCTCAAGTCTTCTAGTAATGTACTATTGCTAG
CTCTCAGAGGATTTGTCACAGCAACTAGTATTGCTGTGGTGGAAGAAGTAGTTTTCAGATCATGGCTTCCAGAAGAAGTT
GCTGTTGACCTTGGCTACTACAGTGCCATTCTGATATCTGGGGTTGCATTTTCTCTTATTCACCGGTCCCTACCTTCAGT
ACCAGGCTTCTTGCTACTTTCACTAGTTCTTTTTGGACTTAAACAAAGGACGCAAGGGAAGCTTGCTGCACCTATTGGCC
TTCGTTCTGGAATTATGACAGCTAGTTATCTGATACAAACCAGTGGTATTATTCAATCCAAACCTGTTGTAACCTTCCAA
TCGGGGATAGTCTCGTCCATTGATTACAAGGTTGAAAGAACAAACCAAGTTGTTGGATATGCCCTGGTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30042.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis