Browse Element(s) Details


OsAffx.30075.1.S1_at

Description tigr:9637.m02600
TID=OsAffx.30075.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2935011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29320Os.47130.4.A1_x_at1/119+17797812..17798138retrotransposon protein, putative, unclassified
LOC_Os09g29330NANA9+17798761..17804713retrotransposon protein, putative, unclassified
LOC_Os09g29340Os.28943.1.S1_x_at2/119+17805337..17807577retrotransposon protein, putative, unclassified
LOC_Os09g29350OsAffx.30075.1.S1_at11/119+17821799..17822254hypothetical protein
LOC_Os09g29360OsAffx.30076.1.S1_at11/119+17825478..17827459Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g29370NANA9+17829901..17833915Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g29380Os.14254.1.S1_at11/119+17834904..17837015expressed protein
LOC_Os09g29390Os.14537.1.S1_at11/119+17842410..17843627Blue copper protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30075.1.S1_at--209--311Chr09:17822174..17822198 (25 bp)
AGACCTTCGGGTCTTCGTTTGCCTG
LOC_Os09g29350
OsAffx.30075.1.S1_at--470--7571Chr09:17822166..17822190 (25 bp)
GGGTCTTCGTTTGCCTGGACCACTA
LOC_Os09g29350
OsAffx.30075.1.S1_at--1020--2011Chr09:17822145..17822169 (25 bp)
ACTACAGCACTCTCTGCAAGGGCGT
LOC_Os09g29350
OsAffx.30075.1.S1_at--38--5171Chr09:17822130..17822154 (25 bp)
GCAAGGGCGTCAAGTGCGACTTCCT
LOC_Os09g29350
OsAffx.30075.1.S1_at--961--2851Chr09:17822119..17822143 (25 bp)
AAGTGCGACTTCCTGCTTCAGCTTC
LOC_Os09g29350
OsAffx.30075.1.S1_at--409--10531Chr09:17822103..17822127 (25 bp)
TTCAGCTTCTCCACGCCAGGAGCAT
LOC_Os09g29350
OsAffx.30075.1.S1_at--847--711Chr09:17821996..17822020 (25 bp)
ATGATCCCAGCGTTCCGCTACAGCT
LOC_Os09g29350
OsAffx.30075.1.S1_at--644--1811Chr09:17821959..17821983 (25 bp)
ACGCGAGGCTGGACGTCCCCTTCAT
LOC_Os09g29350
OsAffx.30075.1.S1_at--1066--10531Chr09:17821939..17821963 (25 bp)
TTCATGCTCCGCCTTGTGCGCGGAT
LOC_Os09g29350
OsAffx.30075.1.S1_at--802--6911Chr09:17821888..17821912 (25 bp)
GTAGGAGGCACGACGGCCACCTGCA
LOC_Os09g29350
OsAffx.30075.1.S1_at--700--911Chr09:17821855..17821879 (25 bp)
AGGCTGGTAGATGCGTACCCGCCGA
LOC_Os09g29350
Target Sequence 
AGACCTTCGGGTCTTCGTTTGCCTGGACCACTACAGCACTCTCTGCAAGGGCGTCAAGTGCGACTTCCTGCTTCAGCTTC
TCCACGCCAGGAGCATGGCCGGGCCCGACGCGACGCTCCTCGCCGACCTCGACGCGCGCGCGGCGTGGCGGCTAGACCAG
GCGTCGCTCGGCGCCGTCATGATCCCAGCGTTCCGCTACAGCTGCGACCCGCCCGACGCGAGGCTGGACGTCCCCTTCAT
GCTCCGCCTTGTGCGCGGATTCCTCCGCGAGGGCGGCAAGGCTAGCGTAGGAGGCACGACGGCCACCTGCAGGGTGGCGA
GGCTGGTAGATGCGTACCCGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis