Browse Element(s) Details


OsAffx.3009.1.S1_at

Description tigr:9630.m04829
TID=OsAffx.3009.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to At2g17660
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4934011/11nitrate-induced NOI protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49300NANA2+30122093..30125424transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49310Os.49207.1.S1_at11/112+30129487..30132803Protein kinase G11A, putative, expressed
LOC_Os02g49320Os.9750.1.S1_at11/112+30133788..30137583sucrase, putative, expressed
LOC_Os02g49326Os.27449.1.S1_at11/112+30138391..30142823SET domain-containing protein, putative, expressed
LOC_Os02g49332OsAffx.3008.1.S1_at11/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49332Os.20406.3.S1_x_at11/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49332Os.20406.1.S1_a_at11/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49332Os.20406.4.S1_at9/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49340OsAffx.3009.1.S1_at11/112+30149093..30150461nitrate-induced NOI protein, putative, expressed
LOC_Os02g49350OsAffx.12563.1.S1_at11/112+30151732..30152756Plastocyanin-like domain containing protein, expressed
LOC_Os02g49350Os.7446.1.S1_s_at11/112+30151732..30152756Plastocyanin-like domain containing protein, expressed
LOC_Os02g49360Os.14816.1.S1_at11/112+30153349..30155848tRNA methyltransferase family protein, expressed
LOC_Os02g49370Os.8891.1.S1_at10/112+30158404..30159572leafy cotyledon1, putative, expressed
LOC_Os02g49380NANA2+30163597..30166399hypothetical protein
LOC_Os02g49390NANA2+30170408..30176634retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0010167biological_processresponse to nitrate
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3009.1.S1_at--292--2831Chr02:30149732..30149756 (25 bp)
AAGTTCGGCGCATGGGACGTCAACA
LOC_Os02g49340
OsAffx.3009.1.S1_at--1021--10591Chr02:30149729..30149753 (25 bp)
TTCGGCGCATGGGACGTCAACAACC
LOC_Os02g49340
OsAffx.3009.1.S1_at--1094--4571Chr02:30149725..30149749 (25 bp)
GCGCATGGGACGTCAACAACCCGGC
LOC_Os02g49340
OsAffx.3009.1.S1_at--568--9491Chr02:30149699..30149723 (25 bp)
TCTGCCGACGGTTTCACGGTGATCT
LOC_Os02g49340
OsAffx.3009.1.S1_at--386--1911Chr02:30149692..30149716 (25 bp)
ACGGTTTCACGGTGATCTTCAGCAA
LOC_Os02g49340
OsAffx.3009.1.S1_at--695--7391Chr02:30149681..30149705 (25 bp)
GTGATCTTCAGCAAAGCCAGGGATG
LOC_Os02g49340
OsAffx.3009.1.S1_at--1080--431Chr02:30149678..30149702 (25 bp)
ATCTTCAGCAAAGCCAGGGATGAGA
LOC_Os02g49340
OsAffx.3009.1.S1_at--818--1071Chr02:30149650..30149674 (25 bp)
AGGGCCCCGTCAACGTGGACGCCAG
LOC_Os02g49340
OsAffx.3009.1.S1_at--31--1471Chr02:30149390..30149414 (25 bp)
AGAAGTGGTTTTGCTGTGTGTCGCC
LOC_Os02g49340
OsAffx.3009.1.S1_at--1108--1091Chr02:30149387..30149411 (25 bp)
AGTGGTTTTGCTGTGTGTCGCCCAG
LOC_Os02g49340
OsAffx.3009.1.S1_at--164--10391Chr02:30149382..30149406 (25 bp)
TTTTGCTGTGTGTCGCCCAGCCCCA
LOC_Os02g49340
Target Sequence 
AAGTTCGGCGCATGGGACGTCAACAACCCGGCCTCTGCCGACGGTTTCACGGTGATCTTCAGCAAAGCCAGGGATGAGAA
GAAGGGCCCCGTCAACGTGGACGCCAGCACCAGAAGAAGTGGTTTTGCTGTGTGTCGCCCAGCCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3009.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis