Browse Element(s) Details


OsAffx.30093.1.S1_at

Description tigr:9637.m02674
TID=OsAffx.30093.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=pollen surface protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3001011/11Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29960OsAffx.6446.1.S1_at11/119+18233923..18234868Dof domain, zinc finger family protein, expressed
LOC_Os09g29970Os.11662.1.S1_at11/119+18236699..18239535TMV-MP30 binding protein 2C, putative, expressed
LOC_Os09g29980Os.21903.1.S1_at11/119+18239808..18244316transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g29980Os.33600.1.S1_at11/119+18239808..18244316transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g29990OsAffx.17967.1.S1_at11/119+18247970..18248731hypothetical protein
LOC_Os09g30000OsAffx.30092.1.S1_at11/119+18251434..18253020hypothetical protein
LOC_Os09g30010Os.56233.1.S1_s_at11/119+18256643..18257801Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os09g30010OsAffx.30093.1.S1_at11/119+18256643..18257801Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os09g30020NANA9+18261290..18266894retrotransposon protein, putative, unclassified
LOC_Os09g30030Os.12779.1.S1_at2/119+18268252..18268497expressed protein
LOC_Os09g30040NANA9+18271767..18271991expressed protein
LOC_Os09g30050NANA9+18274149..18274718expressed protein
LOC_Os09g30060Os.50081.1.S1_x_at1/119+18277828..18278633hypothetical protein
LOC_Os09g30070Os.50531.1.S1_at11/119+18280422..18286712expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30093.1.S1_at--1012--8771Chr09:18257683..18257707 (25 bp)
TGTTAGTGCTTTCCTAGATTTTCGT
LOC_Os09g30010
OsAffx.30093.1.S1_at--409--6791Chr09:18257684..18257708 (25 bp)
GTTAGTGCTTTCCTAGATTTTCGTT
LOC_Os09g30010
OsAffx.30093.1.S1_at--35--10451Chr09:18257685..18257709 (25 bp)
TTAGTGCTTTCCTAGATTTTCGTTT
LOC_Os09g30010
OsAffx.30093.1.S1_at--590--10071Chr09:18257686..18257710 (25 bp)
TAGTGCTTTCCTAGATTTTCGTTTT
LOC_Os09g30010
OsAffx.30093.1.S1_at--700--10371Chr09:18257708..18257732 (25 bp)
TTTTTTGTTTGTGCCTGCTGTTGCT
LOC_Os09g30010
OsAffx.30093.1.S1_at--1159--10391Chr09:18257710..18257734 (25 bp)
TTTTGTTTGTGCCTGCTGTTGCTAC
LOC_Os09g30010
OsAffx.30093.1.S1_at--905--10251Chr09:18257711..18257735 (25 bp)
TTTGTTTGTGCCTGCTGTTGCTACT
LOC_Os09g30010
OsAffx.30093.1.S1_at--635--10791Chr09:18257712..18257736 (25 bp)
TTGTTTGTGCCTGCTGTTGCTACTT
LOC_Os09g30010
OsAffx.30093.1.S1_at--118--10511Chr09:18257745..18257769 (25 bp)
TTAATTAGCATTAGTAGATCATGAG
LOC_Os09g30010
OsAffx.30093.1.S1_at--239--9751Chr09:18257746..18257770 (25 bp)
TAATTAGCATTAGTAGATCATGAGA
LOC_Os09g30010
OsAffx.30093.1.S1_at--685--3131Chr09:18257747..18257771 (25 bp)
AATTAGCATTAGTAGATCATGAGAT
LOC_Os09g30010
Target Sequence 
TGTTAGTGCTTTCCTAGATTTTCGTTTTTTTGTTTGTGCCTGCTGTTGCTACTTGTTAATTGTTAATTAGCATTAGTAGA
TCATGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis