Browse Element(s) Details


OsAffx.30144.1.S1_at

Description tigr:9637.m03004
TID=OsAffx.30144.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3578011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35760Os.57414.1.S1_x_at11/119+20568102..20573844OCL3 protein, putative, expressed
LOC_Os09g35760OsAffx.6486.1.S1_x_at10/119+20568102..20573844OCL3 protein, putative, expressed
LOC_Os09g35760Os.57416.1.S1_x_at1/119+20568102..20573844OCL3 protein, putative, expressed
LOC_Os09g35770Os.52917.1.S1_at1/119+20575896..20578473transposon protein, putative, Mutator sub-class
LOC_Os09g35780OsAffx.30144.1.S1_at11/119+20587366..20588179expressed protein
LOC_Os09g35790Os.11941.2.S1_at11/119+20590771..20594662HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35790Os.54707.1.S1_x_at11/119+20590771..20594662HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35790Os.11941.1.S1_at10/119+20590771..20594662HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35790OsAffx.30145.1.S1_at7/119+20590771..20594662HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35800Os.8507.1.S1_at11/119+20600134..20602522UDP-glucose 4-epimerase, putative, expressed
LOC_Os09g35810Os.8734.1.S1_a_at11/119+20605389..20608644NC domain-containing protein, putative, expressed
LOC_Os09g35820NANA9+20609072..20610125hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30144.1.S1_at--230--9071Chr09:20587580..20587604 (25 bp)
TGCATTGCCTCAGCTACAGGCTGTT
LOC_Os09g35780
OsAffx.30144.1.S1_at--102--91Chr09:20587577..20587601 (25 bp)
ATTGCCTCAGCTACAGGCTGTTCGA
LOC_Os09g35780
OsAffx.30144.1.S1_at--900--9651Chr09:20587571..20587595 (25 bp)
TCAGCTACAGGCTGTTCGACGCCTC
LOC_Os09g35780
OsAffx.30144.1.S1_at--147--2131Chr09:20587565..20587589 (25 bp)
ACAGGCTGTTCGACGCCTCCGGGTG
LOC_Os09g35780
OsAffx.30144.1.S1_at--1004--9271Chr09:20587548..20587572 (25 bp)
TCCGGGTGCAGGACGCGCCGCAACG
LOC_Os09g35780
OsAffx.30144.1.S1_at--1106--8271Chr09:20587524..20587548 (25 bp)
GGCATCGTCAACATCACCGTCAGGA
LOC_Os09g35780
OsAffx.30144.1.S1_at--696--511Chr09:20587521..20587545 (25 bp)
ATCGTCAACATCACCGTCAGGAGGA
LOC_Os09g35780
OsAffx.30144.1.S1_at--507--371Chr09:20587512..20587536 (25 bp)
ATCACCGTCAGGAGGACGGACGTCA
LOC_Os09g35780
OsAffx.30144.1.S1_at--795--3471Chr09:20587504..20587528 (25 bp)
CAGGAGGACGGACGTCAAGTACACC
LOC_Os09g35780
OsAffx.30144.1.S1_at--742--4471Chr09:20587468..20587492 (25 bp)
GCCGGTGAAAGCTCCGGCGTACGCC
LOC_Os09g35780
OsAffx.30144.1.S1_at--1050--7631Chr09:20587434..20587458 (25 bp)
GGGAGCGGCGGCTCTTGCTACGGCG
LOC_Os09g35780
Target Sequence 
TGCATTGCCTCAGCTACAGGCTGTTCGACGCCTCCGGGTGCAGGACGCGCCGCAACGGCATCGTCAACATCACCGTCAGG
AGGACGGACGTCAAGTACACCGCGCCGCCGCCGCCGGTGAAAGCTCCGGCGTACGCCGGCGCGAGCGGGAGCGGCGGCTC
TTGCTACGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30144.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis