Browse Element(s) Details


OsAffx.30163.1.S1_at

Description tigr:9637.m03139
TID=OsAffx.30163.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3709011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37040OsAffx.30162.1.S1_at11/119+21365910..21369912expressed protein
LOC_Os09g37050Os.51002.1.S1_at10/119+21370433..21371895RING-H2 finger protein ATL2B, putative, expressed
LOC_Os09g37060OsAffx.30725.5.S1_x_at11/119+21375332..21377938transposon protein, putative, unclassified, expressed
LOC_Os09g37070OsAffx.18022.1.S1_at11/119+21381175..21382806pentatricopeptide, putative
LOC_Os09g37080Os.53581.1.S1_at11/119+21385537..21386617expressed protein
LOC_Os09g37090OsAffx.30163.1.S1_at11/119+21389834..21390046hypothetical protein
LOC_Os09g37100Os.11408.1.S2_at11/119+21391293..21397466Phospholipase D delta, putative, expressed
LOC_Os09g37100Os.11408.1.S1_at10/119+21391293..21397466Phospholipase D delta, putative, expressed
LOC_Os09g37110OsAffx.30164.1.S1_at11/119+21398391..21401460hypothetical protein
LOC_Os09g37120OsAffx.6501.1.S1_x_at11/119+21408790..21410016Ornithine decarboxylase, putative, expressed
LOC_Os09g37120OsAffx.13673.1.S1_x_at1/119+21408790..21410016Ornithine decarboxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30163.1.S1_at--710--1611Chr09:21389864..21389888 (25 bp)
AGCTGTGTGCGAGAGATCGTCGTCC
LOC_Os09g37090
OsAffx.30163.1.S1_at--569--8671Chr09:21389867..21389891 (25 bp)
TGTGTGCGAGAGATCGTCGTCCTCG
LOC_Os09g37090
OsAffx.30163.1.S1_at--1139--7251Chr09:21389885..21389909 (25 bp)
GTCCTCGCTGAATTGGTGGCCGCGA
LOC_Os09g37090
OsAffx.30163.1.S1_at--1081--4211Chr09:21389904..21389928 (25 bp)
CCGCGAGAGCGGATCGTGTCTCGCT
LOC_Os09g37090
OsAffx.30163.1.S1_at--7--4691Chr09:21389926..21389950 (25 bp)
GCTGCCGTCCAAGCGTTTAGTAATT
LOC_Os09g37090
OsAffx.30163.1.S1_at--590--2671Chr09:21389936..21389960 (25 bp)
AAGCGTTTAGTAATTTTGGCGATGA
LOC_Os09g37090
OsAffx.30163.1.S1_at--1105--8371Chr09:21389953..21389977 (25 bp)
GGCGATGATTAGTACGTTCCTACAT
LOC_Os09g37090
OsAffx.30163.1.S1_at--865--10051Chr09:21389962..21389986 (25 bp)
TAGTACGTTCCTACATGTTGACGGA
LOC_Os09g37090
OsAffx.30163.1.S1_at--767--9251Chr09:21389970..21389994 (25 bp)
TCCTACATGTTGACGGAATCGCATT
LOC_Os09g37090
OsAffx.30163.1.S1_at--869--1931Chr09:21389982..21390006 (25 bp)
ACGGAATCGCATTAGCTGGAGGTAT
LOC_Os09g37090
OsAffx.30163.1.S1_at--931--4931Chr09:21389990..21390014 (25 bp)
GCATTAGCTGGAGGTATAGTACGGC
LOC_Os09g37090
Target Sequence 
AGCTGTGTGCGAGAGATCGTCGTCCTCGCTGAATTGGTGGCCGCGAGAGCGGATCGTGTCTCGCTGCCGTCCAAGCGTTT
AGTAATTTTGGCGATGATTAGTACGTTCCTACATGTTGACGGAATCGCATTAGCTGGAGGTATAGTACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis