Browse Element(s) Details


OsAffx.30164.1.S1_at

Description tigr:9637.m03141
TID=OsAffx.30164.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3711011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37060OsAffx.30725.5.S1_x_at11/119+21375332..21377938transposon protein, putative, unclassified, expressed
LOC_Os09g37070OsAffx.18022.1.S1_at11/119+21381175..21382806pentatricopeptide, putative
LOC_Os09g37080Os.53581.1.S1_at11/119+21385537..21386617expressed protein
LOC_Os09g37090OsAffx.30163.1.S1_at11/119+21389834..21390046hypothetical protein
LOC_Os09g37100Os.11408.1.S2_at11/119+21391293..21397466Phospholipase D delta, putative, expressed
LOC_Os09g37100Os.11408.1.S1_at10/119+21391293..21397466Phospholipase D delta, putative, expressed
LOC_Os09g37110OsAffx.30164.1.S1_at11/119+21398391..21401460hypothetical protein
LOC_Os09g37120OsAffx.6501.1.S1_x_at11/119+21408790..21410016Ornithine decarboxylase, putative, expressed
LOC_Os09g37120OsAffx.13673.1.S1_x_at1/119+21408790..21410016Ornithine decarboxylase, putative, expressed
LOC_Os09g37130OsAffx.2382.1.S1_x_at1/119+21417852..21418253hypothetical protein
LOC_Os09g37140NANA9+21423784..21425085hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30164.1.S1_at--1043--9691Chr09:21398884..21398908 (25 bp)
TCAACGCCACGACATGGCTGCTGCA
LOC_Os09g37110
OsAffx.30164.1.S1_at--269--2151Chr09:21398860..21398884 (25 bp)
ACACCTTCGCCGGAATGACGCGAAA
LOC_Os09g37110
OsAffx.30164.1.S1_at--749--8171Chr09:21398849..21398873 (25 bp)
GGAATGACGCGAAACGAGTACCCTC
LOC_Os09g37110
OsAffx.30164.1.S1_at--724--7291Chr09:21398783..21398807 (25 bp)
GTGCTCCGGTTCACCGGCCCGGAGA
LOC_Os09g37110
OsAffx.30164.1.S1_at--91--5671Chr09:21398690..21398714 (25 bp)
GACATGCCGCCGTCGTGGGACCTCA
LOC_Os09g37110
OsAffx.30164.1.S1_at--743--8631Chr09:21398675..21398699 (25 bp)
TGGGACCTCACGTGGACGCGCTACC
LOC_Os09g37110
OsAffx.30164.1.S1_at--909--3951Chr09:21398548..21398572 (25 bp)
CGGAGTTCAAGCACCGCGCGCTGAG
LOC_Os09g37110
OsAffx.30164.1.S1_at--819--1351Chr09:21398525..21398549 (25 bp)
AGAGAGCTGGTGATCGTCGGCTACA
LOC_Os09g37110
OsAffx.30164.1.S1_at--220--511Chr09:21398513..21398537 (25 bp)
ATCGTCGGCTACAGGCCAAGCGAGT
LOC_Os09g37110
OsAffx.30164.1.S1_at--882--2671Chr09:21398496..21398520 (25 bp)
AAGCGAGTGGCAGCACGAGGAGTTT
LOC_Os09g37110
OsAffx.30164.1.S1_at--465--713Chr09:21398462..21398486 (25 bp)
ATGATGAGCACGTGCGTGGCGCTGC
LOC_Os09g37110
Target Sequence 
TCAACGCCACGACATGGCTGCTGCACACCTTCGCCGGAATGACGCGAAACGAGTACCCTCTCTTCAACTTCCTCAACCGC
CTGCCGGACCTGGACACCCTCGTGCTCCGGTTCACCGGCCCGGAGAGGTGGGTGGCGCCGGCGATGCTCCACGACGACGC
GCCGCTGCGCAGGCTGAGGCGGCTGCTCGTCGCCGACATGCCGCCGTCGTGGGACCTCACGTGGACGCGCTACCTGCTGG
AGGCGGCGGCCGCCCTCGAGACGCTGCACATCCACGTCGATGTCGCCGCCGGGACGGCGGCGTCGCCGGGTCGGCGCGTC
GCCTGGCCGACGGCGGCGGAGTTCAAGCACCGCGCGCTGAGAGAGCTGGTGATCGTCGGCTACAGGCCAAGCGAGTGGCA
GCACGAGGAGTTTGTGAGCTTGATGATGAGCACGTGCGTGGCGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30164.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis