Browse Element(s) Details


OsAffx.30187.1.S1_at

Description tigr:9634.m01352
TID=OsAffx.30187.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1361011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13590OsAffx.27616.1.S1_at11/116+7518620..7519481hypothetical protein
LOC_Os06g13600Os.7614.1.S1_at11/116+7529846..7533850HEAT repeat family protein, expressed
LOC_Os06g13610OsAffx.30187.1.S1_at11/116+7539775..7540865hypothetical protein
LOC_Os06g13620OsAffx.15410.1.S1_at11/116+7543707..7544168hypothetical protein
LOC_Os06g13630OsAffx.16522.1.S1_at1/116+7544994..7548258transposon protein, putative, Mutator sub-class
LOC_Os06g13640Os.27936.1.A1_at1/116+7554464..7557366expressed protein
LOC_Os06g13650Os.27480.1.S1_at11/116+7562738..7570034Glycosyl hydrolases family 38 protein, expressed
LOC_Os06g13650OsAffx.27618.1.S1_at10/116+7562738..7570034Glycosyl hydrolases family 38 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30187.1.S1_at--478--8091Chr06:7539934..7540317 (25 bp)
GGAGCGCGGCCGAACATACATTTTG
LOC_Os06g13610
OsAffx.30187.1.S1_at--616--2513Chr09:21878543..21878567 (25 bp)
AACATACATTTTGTGTTCGACAAAT
NONE
OsAffx.30187.1.S1_at--930--8677Chr09:21878554..21878578 (25 bp)
TGTGTTCGACAAATTTTCATCAAGA
NONE
OsAffx.30187.1.S1_at--283--5598Chr09:21878577..21878597 (21 bp)
GAAATCTCAAGAACACGTCGTACGT
NONE
OsAffx.30187.1.S1_at--541--2751Chr06:7540347..7540371 (25 bp)
AAGAACACGTCGTACGTTCAGGCAA
LOC_Os06g13610
OsAffx.30187.1.S1_at--935--5471Chr06:7540349..7540373 (25 bp)
GAACACGTCGTACGTTCAGGCAAAA
LOC_Os06g13610
OsAffx.30187.1.S1_at--343--3351Chr06:7540352..7540376 (25 bp)
CACGTCGTACGTTCAGGCAAAAGAA
LOC_Os06g13610
OsAffx.30187.1.S1_at--879--6972Chr06:7540358..7540382 (25 bp)
GTACGTTCAGGCAAAAGAACAACAG
LOC_Os06g13610
OsAffx.30187.1.S1_at--1061--5977Chr09:21878618..21878642 (25 bp)
GAGACAAGAGGCGATCGATGGCAAT
NONE
OsAffx.30187.1.S1_at--224--6451Chr06:7540446..7540470 (25 bp)
GATCACATGCTCGTCCGCAGTGGTG
LOC_Os06g13610
OsAffx.30187.1.S1_at--505--3531Chr06:7540451..7540475 (25 bp)
CATGCTCGTCCGCAGTGGTGTTCAA
LOC_Os06g13610
Target Sequence 
GGAGCGCGGCCGAACATACATTTTGTGTTCGACAAATTTTCATCAAGAAATCTCAAGAACACGTCGTACGTTCAGGCAAA
AGAACAACAGAGACAAGAGGCGATCGATGGCAATGGCCATGGCGAAGCTGTTCATCACCAGGCTGAGCACGGCGATCACA
TGCTCGTCCGCAGTGGTGTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30187.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis