Browse Element(s) Details


OsAffx.3020.1.S1_at

Description tigr:9630.m04877
TID=OsAffx.3020.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4979011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49760Os.26684.1.S1_at11/112+30412629..30417270Potassium transporter 8, putative, expressed
LOC_Os02g49770Os.50746.1.S1_at11/112+30421851..30425872NHL repeat-containing protein, putative, expressed
LOC_Os02g49780Os.9055.1.S1_at11/112+30426278..30428217expressed protein
LOC_Os02g49780OsAffx.30922.1.S1_x_at1/112+30426278..30428217expressed protein
LOC_Os02g49780OsAffx.30922.1.S1_at1/112+30426278..30428217expressed protein
LOC_Os02g49790OsAffx.3020.1.S1_at11/112+30429159..30431646expressed protein
LOC_Os02g49800Os.10843.1.S1_at11/112+30432084..30435591Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g49810OsAffx.3021.1.S1_at11/112+30436599..30436965hypothetical protein
LOC_Os02g49820Os.52416.1.S1_at11/112+30439080..30442151RNA recognition motif family protein, expressed
LOC_Os02g49830OsAffx.24799.1.S1_at11/112+30442173..30443713PPR986-12, putative, expressed
LOC_Os02g49840OsAffx.12568.1.S1_at10/112+30450833..30456821Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os02g49840Os.26399.1.S1_at10/112+30450833..30456821Agamous-like MADS box protein AGL21, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3020.1.S1_at--824--9511Chr02:30431082..30431106 (25 bp)
TCTATCAGAAGTCCACTTCGCAGCT
LOC_Os02g49790
OsAffx.3020.1.S1_at--859--1271Chr02:30431123..30431147 (25 bp)
AGATCGACCAGAAGTCTTACCTCCT
LOC_Os02g49790
OsAffx.3020.1.S1_at--1087--5571Chr02:30431160..30431184 (25 bp)
GAAATGGCAAGCTCTCATCAGGCGC
LOC_Os02g49790
OsAffx.3020.1.S1_at--626--9211Chr02:30431290..30431314 (25 bp)
TCCAGCTTAAATTCGGCACCCAGGA
LOC_Os02g49790
OsAffx.3020.1.S1_at--165--931Chr02:30431311..30431335 (25 bp)
AGGACCGACGCATCGTACAAGCCGC
LOC_Os02g49790
OsAffx.3020.1.S1_at--401--1431Chr02:30431407..30431431 (25 bp)
AGAACCTACGAGAGCGCGAGCGCGC
LOC_Os02g49790
OsAffx.3020.1.S1_at--1124--6691Chr02:30431445..30431469 (25 bp)
GTTCGCGTCTCTTCTGATCGAGTTC
LOC_Os02g49790
OsAffx.3020.1.S1_at--600--971Chr02:30431482..30431506 (25 bp)
AGGAGCCTCGTTGATGCGTTCGAAG
LOC_Os02g49790
OsAffx.3020.1.S1_at--447--1371Chr02:30431505..30431529 (25 bp)
AGAGCTGAGTGAAAGCGCCAACTTC
LOC_Os02g49790
OsAffx.3020.1.S1_at--1039--5871Chr02:30431548..30431572 (25 bp)
GAGCCCTCCGCGATCAGCAGGGAGA
LOC_Os02g49790
OsAffx.3020.1.S1_at--1044--6951Chr02:30431586..30431610 (25 bp)
GTACAGATTACGCAGGTTTTTTGGG
LOC_Os02g49790
Target Sequence 
TCTATCAGAAGTCCACTTCGCAGCTGAACAGCTGCAGAAGAAGATCGACCAGAAGTCTTACCTCCTCGTCAACACGGAGA
AATGGCAAGCTCTCATCAGGCGCCATGGAGGAGGAGCCAAGGATGGTGGGCTTGTTCCGGGGCGCCGCGCCATTGCCAGC
CCCGGTGCAGTGCACAAGTCCAGCAGCTTCGCCTCGAGCACGTCCCACTCCAGCTTAAATTCGGCACCCAGGACCGACGC
ATCGTACAAGCCGCAGCCGCCATGGCCGATCAGGCAACCGTCCTTCCACCCGAGCTTGCCGTTCGAAGCTGCGGCGGCGG
AGGCGAGAACCTACGAGAGCGCGAGCGCGCTGTCGCTGGCCACGTTCGCGTCTCTTCTGATCGAGTTCGTTGCTCGGCTC
AGGAGCCTCGTTGATGCGTTCGAAGAGCTGAGTGAAAGCGCCAACTTCAAGGAGGACCCCGTGGAGGAGCCCTCCGCGAT
CAGCAGGGAGAATGGAGGTGTTTTGTACAGATTACGCAGGTTTTTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis