Browse Element(s) Details


OsAffx.30200.1.S1_at

Description tigr:9637.m03344
TID=OsAffx.30200.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=135585 cysteine proteinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3916010/11Papain family cysteine protease containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39140OsAffx.18056.1.S1_at11/119+22465311..22466222Papain family cysteine protease containing protein
LOC_Os09g39150Os.47463.1.S1_x_at5/119+22470497..22480343transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g39150Os.14491.2.S1_x_at5/119+22470497..22480343transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g39160OsAffx.30200.1.S1_at10/119+22487767..22489686Papain family cysteine protease containing protein
LOC_Os09g39170OsAffx.30202.1.S1_x_at11/119+22491224..22493839Papain family cysteine protease containing protein
LOC_Os09g39170OsAffx.30201.1.S1_at11/119+22491224..22493839Papain family cysteine protease containing protein
LOC_Os09g39170Os.51754.1.S1_at1/119+22491224..22493839Papain family cysteine protease containing protein
LOC_Os09g39170OsAffx.6233.1.S1_at1/119+22491224..22493839Papain family cysteine protease containing protein
LOC_Os09g39180Os.47913.1.A1_at10/119+22504524..2250704528 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os09g39190OsAffx.30204.1.S1_at11/119+22507726..22512808Copine family protein, expressed
LOC_Os09g39200Os.47350.1.S1_at10/119+22513028..22516720expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009414biological_processresponse to water deprivation
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30200.1.S1_at--176--4691Chr09:22488590..22488614 (25 bp)
GCGGATACACGTCCTATGCATTCGA
LOC_Os09g39160
OsAffx.30200.1.S1_at--148--10131Chr09:22488604..22488628 (25 bp)
TATGCATTCGACTACGCCGTCAGCA
LOC_Os09g39160
OsAffx.30200.1.S1_at--696--1811Chr09:22488617..22488641 (25 bp)
ACGCCGTCAGCAACGGGATAACTTT
LOC_Os09g39160
OsAffx.30200.1.S1_at--1151--6451Chr09:22488633..22488657 (25 bp)
GATAACTTTGGACCAGTGCTTCAGT
LOC_Os09g39160
OsAffx.30200.1.S1_at--346--9051Chr09:22488707..22488731 (25 bp)
TGCAGGAGCCCTGCAGATTTGATCC
LOC_Os09g39160
OsAffx.30200.1.S1_at--97--6531NONE
GATTTGATCCTAACAAGGCTCCAAT
NONE
OsAffx.30200.1.S1_at--237--2811Chr09:22488845..22488869 (25 bp)
AAGATCGACAGCTACTCCTTCGTGG
LOC_Os09g39160
OsAffx.30200.1.S1_at--781--2691Chr09:22488885..22488909 (25 bp)
AAGCTCTCAAGCAGGCAGTGTACTC
LOC_Os09g39160
OsAffx.30200.1.S1_at--675--4991Chr09:22488899..22488923 (25 bp)
GCAGTGTACTCACAAGGGCCCGTAT
LOC_Os09g39160
OsAffx.30200.1.S1_at--86--4851Chr09:22488942..22488966 (25 bp)
GCTACGAATTCATGATCTACCAAGG
LOC_Os09g39160
OsAffx.30200.1.S1_at--220--10431Chr09:22489442..22489466 (25 bp)
TTAGTGGGCCATGCGGAACTGAGTT
LOC_Os09g39160
Target Sequence 
GCGGATACACGTCCTATGCATTCGACTACGCCGTCAGCAACGGGATAACTTTGGACCAGTGCTTCAGTCCCCCAACGACG
GGGGAGAACTACTTCTACTACCCCGCCTACGAGGCCGTGCAGGAGCCCTGCAGATTTGATCCTAACAAGGCTCCAATTGT
GAAGATCGACAGCTACTCCTTCGTGGATCCCAACGACGAGGAAGCTCTCAAGCAGGCAGTGTACTCACAAGGGCCCGTAT
CCGTCCTCATCGAAGCTAGCTACGAATTCATGATCTACCAAGGGGGTGTGTTTAGTGGGCCATGCGGAACTGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30200.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis