Browse Element(s) Details


OsAffx.30233.1.S1_at

Description tigr:9638.m00080
TID=OsAffx.30233.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=peroxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0176011/11Peroxidase 53 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01720OsAffx.30232.1.S1_at9/1110+452712..456562Transferase family protein
LOC_Os10g01720OsAffx.30232.1.S1_x_at9/1110+452712..456562Transferase family protein
LOC_Os10g01720OsAffx.30232.3.S1_x_at5/1110+452712..456562Transferase family protein
LOC_Os10g01730OsAffx.18076.1.S1_at11/1110+458063..460201hypothetical protein
LOC_Os10g01740NANA10+461662..462058hypothetical protein
LOC_Os10g01750OsAffx.437.1.S1_x_at11/1110+466831..471811retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01750OsAffx.437.1.S1_at11/1110+466831..471811retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01760OsAffx.30233.1.S1_at11/1110+473086..473619Peroxidase 53 precursor, putative
LOC_Os10g01770OsAffx.940.1.S1_x_at1/1110+484511..491354transposon protein, putative, unclassified
LOC_Os10g01780OsAffx.18078.1.S1_at11/1110+493773..494781AT hook motif-containing protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30233.1.S1_at--1106--8811Chr10:473555..473579 (25 bp)
TGTTGGTGATACTGCTCGCAGCAGC
LOC_Os10g01760
OsAffx.30233.1.S1_at--623--5051Chr10:473538..473562 (25 bp)
GCAGCAGCGCTGATCAGCCACTCAT
LOC_Os10g01760
OsAffx.30233.1.S1_at--116--8851Chr10:473528..473552 (25 bp)
TGATCAGCCACTCATCAGCCAATGC
LOC_Os10g01760
OsAffx.30233.1.S1_at--543--3031Chr10:473508..473532 (25 bp)
AATGCCTGGCCTGCTAGTAGCTCCG
LOC_Os10g01760
OsAffx.30233.1.S1_at--986--1651Chr10:473457..473481 (25 bp)
AGCGCCGGATTCTACGACGAGACGT
LOC_Os10g01760
OsAffx.30233.1.S1_at--534--6171Chr10:473295..473319 (25 bp)
GAGGACCTGCCGTCCGGGATCCACA
LOC_Os10g01760
OsAffx.30233.1.S1_at--308--4251Chr10:473282..473306 (25 bp)
CCGGGATCCACACCGAGAAGCGCGT
LOC_Os10g01760
OsAffx.30233.1.S1_at--591--5791Chr10:473217..473241 (25 bp)
GACGACATCAAGTGCGAGCTCGACA
LOC_Os10g01760
OsAffx.30233.1.S1_at--2--2871Chr10:473208..473232 (25 bp)
AAGTGCGAGCTCGACAAGGCATGCC
LOC_Os10g01760
OsAffx.30233.1.S1_at--757--9351Chr10:473198..473222 (25 bp)
TCGACAAGGCATGCCCGGGCGTCGT
LOC_Os10g01760
OsAffx.30233.1.S1_at--1100--1011Chr10:473141..473165 (25 bp)
AGGTCTCCGTCGACCTTGTTGGAGT
LOC_Os10g01760
Target Sequence 
TGTTGGTGATACTGCTCGCAGCAGCGCTGATCAGCCACTCATCAGCCAATGCCTGGCCTGCTAGTAGCTCCGGCTCCGGC
GGCGGCGGCGGCGGCCTCAGCGCCGGATTCTACGACGAGACGTGCCCCAGCGCGCAGGACGTGGTGCGGCGCGTGATCCA
GGACGCCCGCGTCGCCGACCCGCGCATCCCGGCCTCCCTCATCCGCCTCCACTTCCACGACTGCTTCGTCAACGGCTGCG
ACGCCTCCATCCTCCTCGACGAGGACCTGCCGTCCGGGATCCACACCGAGAAGCGCGTCCCGGCCAACGACAACTCCGCC
CGGGGGTTCGACGTCGTCGACGACATCAAGTGCGAGCTCGACAAGGCATGCCCGGGCGTCGTCTCCTGCGCCGACATCCT
CGCCATCGCCGCCCAGGTCTCCGTCGACCTTGTTGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis