Browse Element(s) Details


OsAffx.30237.2.S1_x_at

Description tigr:9631.m01746
TID=OsAffx.30237.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1777011/11hypothetical protein
LOC_Os10g020802/11POT family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17730Os.52359.1.S1_at11/113+9842895..9847697prephenate dehydratase family protein, expressed
LOC_Os03g17740Os.10761.1.S1_at11/113+9851299..9855629plastidic phosphate translocator-like protein2, putative, expressed
LOC_Os03g17750OsAffx.12901.1.S1_at11/113+9856054..9856442hypothetical protein
LOC_Os03g17760Os.14770.1.S1_at11/113+9857077..9859981RNA recognition motif family protein, expressed
LOC_Os03g17770OsAffx.30237.2.S1_x_at11/113+9869463..9870476hypothetical protein
LOC_Os03g17780Os.25009.1.A1_at11/113+9872475..9875649WD domain containing protein, putative, expressed
LOC_Os03g17790Os.15938.1.S1_at5/113+9879055..9879343hypothetical protein
LOC_Os03g17800Os.53801.1.S1_at11/113+9883680..9886059Phosphatidylinositol transfer protein, expressed
LOC_Os03g17810Os.53414.1.S1_at11/113+9895146..9896337LOB domain protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30237.2.S1_x_at--1059--3951Chr03:9869926..9869950 (25 bp)
CGGTGTGGACCAGGGCCACCGGGAT
LOC_Os03g17770
OsAffx.30237.2.S1_x_at--1144--1072Chr10:664887..664910 (24 bp)
AGGGCCACCGGGATCGTCTACTGCA
LOC_Os10g02080
OsAffx.30237.2.S1_x_at--817--6392Chr10:664876..664900 (25 bp)
GATCGTCTACTGCATGGTGCTCGTC
LOC_Os10g02080
OsAffx.30237.2.S1_x_at--1000--9411Chr03:9869833..9869857 (25 bp)
TCGGGTTCGGAGCTGGCGCGTTTGC
LOC_Os03g17770
OsAffx.30237.2.S1_x_at--344--7291Chr03:9869756..9869780 (25 bp)
GTGCCGCTCTACGATGCCGCGGTAG
LOC_Os03g17770
OsAffx.30237.2.S1_x_at--146--3971Chr03:9869725..9869749 (25 bp)
CGGTGCGGCGGCTCACCAGCAACAA
LOC_Os03g17770
OsAffx.30237.2.S1_x_at--705--4751Chr03:9869694..9869718 (25 bp)
GCTGACCGAGATGCAGCGCATCGGT
LOC_Os03g17770
OsAffx.30237.2.S1_x_at--970--491Chr03:9869675..9869699 (25 bp)
ATCGGTGCCGGCATGACGCTGTCCG
LOC_Os03g17770
OsAffx.30237.2.S1_x_at--413--9431Chr03:9869674..9869698 (25 bp)
TCGGTGCCGGCATGACGCTGTCCGT
LOC_Os03g17770
OsAffx.30237.2.S1_x_at--643--4551Chr03:9869568..9869592 (25 bp)
GCGCCGAGCGGAGCAACAGTTCGGT
LOC_Os03g17770
OsAffx.30237.2.S1_x_at--679--5071Chr03:9869496..9869520 (25 bp)
GCAGCGCGGAGCTGGATGCTGGAAA
LOC_Os03g17770
Target Sequence 
CGGTGTGGACCAGGGCCACCGGGATCGTCTACTGCATGGTGCTCGTCCAGCAGCCGCTCTTCACGGTGCAGGGCCGCGCC
ATGCGCCGCCGCCTCGGGTTCGGAGCTGGCGCGTTTGCCATCCCGGCGGCGTCGCTCCACTCTGTCTACGCCGCCGCCAT
GCTCATCCTCGTGCCGCTCTACGATGCCGCGGTAGTGCCCGCGGTGCGGCGGCTCACCAGCAACAAGAGGGGGCTGACCG
AGATGCAGCGCATCGGTGCCGGCATGACGCTGTCCGTCGCCGCCATGGCCGCCGCGGCGACCGTCGAGGGGAGACGGCTG
GCGGTGGGGAAGGCAGCGGCGCGGCTCGGCTCCGGCAAGCGCCGAGCGGAGCAACAGTTCGGTGGGGGTGGAGATGGAGC
GGTGTCGGCGACGACGTCTTCTCCCCGACGGCAGCGCGGAGCTGGATGCTGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30237.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis