Browse Element(s) Details


OsAffx.30247.1.S1_x_at

Description tigr:9638.m00189
TID=OsAffx.30247.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0283011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02790OsAffx.425.1.S1_at11/1110+1099004..1100764transposon protein, putative, Mariner sub-class
LOC_Os10g02800OsAffx.18096.1.S1_at11/1110+1101004..1101811hypothetical protein
LOC_Os10g02814Os.46737.3.S1_x_at11/1110+1110875..1115631G-protein alpha subunit, putative, expressed
LOC_Os10g02814Os.46737.1.S1_at11/1110+1110875..1115631G-protein alpha subunit, putative, expressed
LOC_Os10g02830OsAffx.30247.1.S1_x_at11/1110+1120860..1121120hypothetical protein
LOC_Os10g02830OsAffx.30247.1.S1_at11/1110+1120860..1121120hypothetical protein
LOC_Os10g02840Os.46511.2.S1_x_at11/1110+1124076..1125580O-methyltransferase family protein, expressed
LOC_Os10g02840Os.46511.1.S1_at10/1110+1124076..1125580O-methyltransferase family protein, expressed
LOC_Os10g02850NANA10+1129527..1132563retrotransposon protein, putative, unclassified
LOC_Os10g02860NANA10+1133184..1137423retrotransposon protein, putative, unclassified
LOC_Os10g02870OsAffx.18097.1.S1_at11/1110+1144096..1145803hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30247.1.S1_x_at--926--7171Chr10:1120991..1121015 (25 bp)
GTCGGCTCCGTCACCGGCGGGATCA
LOC_Os10g02830
OsAffx.30247.1.S1_x_at--82--8371Chr10:1120976..1121000 (25 bp)
GGCGGGATCACGCTCTCCGACATCC
LOC_Os10g02830
OsAffx.30247.1.S1_x_at--503--5671Chr10:1120958..1120982 (25 bp)
GACATCCTGCTCTACATCACCATGA
LOC_Os10g02830
OsAffx.30247.1.S1_x_at--960--9091Chr10:1120951..1120975 (25 bp)
TGCTCTACATCACCATGACGGAGGA
LOC_Os10g02830
OsAffx.30247.1.S1_x_at--508--391Chr10:1120943..1120967 (25 bp)
ATCACCATGACGGAGGAGGACCTCT
LOC_Os10g02830
OsAffx.30247.1.S1_x_at--476--1671Chr10:1120906..1120930 (25 bp)
AGCCGACAGCCACGTACTACGATAA
LOC_Os10g02830
OsAffx.30247.1.S1_x_at--314--5631Chr10:1120902..1120926 (25 bp)
GACAGCCACGTACTACGATAAGCTT
LOC_Os10g02830
OsAffx.30247.1.S1_x_at--8--4391Chr10:1120898..1120922 (25 bp)
GCCACGTACTACGATAAGCTTCCGA
LOC_Os10g02830
OsAffx.30247.1.S1_x_at--126--1891Chr10:1120895..1120919 (25 bp)
ACGTACTACGATAAGCTTCCGACAA
LOC_Os10g02830
OsAffx.30247.1.S1_x_at--701--7011Chr10:1120893..1120917 (25 bp)
GTACTACGATAAGCTTCCGACAAAG
LOC_Os10g02830
OsAffx.30247.1.S1_x_at--767--3711Chr10:1120890..1120914 (25 bp)
CTACGATAAGCTTCCGACAAAGCGA
LOC_Os10g02830
Target Sequence 
GTCGGCTCCGTCACCGGCGGGATCACGCTCTCCGACATCCTGCTCTACATCACCATGACGGAGGAGGACCTCTCGCCGGA
CCCGGAGCCGACAGCCACGTACTACGATAAGCTTCCGACAAAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30247.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis