Browse Element(s) Details


OsAffx.30257.1.S1_at

Description tigr:9638.m00255
TID=OsAffx.30257.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0348011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03450NANA10+1463842..1464354hypothetical protein
LOC_Os10g03460Os.47463.1.S1_x_at5/1110+1466780..1470477transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03460Os.14491.2.S1_x_at4/1110+1466780..1470477transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03470NANA10+1473047..1476379transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03480OsAffx.30257.1.S1_x_at11/1110+1482400..1483317Protein kinase domain containing protein
LOC_Os10g03480OsAffx.30257.1.S1_at11/1110+1482400..1483317Protein kinase domain containing protein
LOC_Os10g03480OsAffx.30252.1.S1_x_at1/1110+1482400..1483317Protein kinase domain containing protein
LOC_Os10g03490OsAffx.30257.2.S1_at11/1110+1485427..1488816Protein kinase domain containing protein
LOC_Os10g03490Os.25139.1.A1_at8/1110+1485427..1488816Protein kinase domain containing protein
LOC_Os10g03500OsAffx.6567.2.S1_at11/1110+1498961..1499455hypothetical protein
LOC_Os10g03500OsAffx.6567.1.S1_x_at11/1110+1498961..1499455hypothetical protein
LOC_Os10g03510OsAffx.18106.1.S1_at11/1110+1500565..1500954hypothetical protein
LOC_Os10g03520OsAffx.18107.1.S1_at11/1110+1507807..1508585expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30257.1.S1_at--353--3951Chr10:1482821..1482845 (25 bp)
CGGACAACATCCTCGTCGTGAACGG
LOC_Os10g03480
OsAffx.30257.1.S1_at--945--2191Chr10:1482818..1482842 (25 bp)
ACAACATCCTCGTCGTGAACGGCGG
LOC_Os10g03480
OsAffx.30257.1.S1_at--245--9351Chr10:1482726..1482750 (25 bp)
TCGCGGGTCGGCACGCTGCTCTACA
LOC_Os10g03480
OsAffx.30257.1.S1_at--263--5651Chr10:1482681..1482705 (25 bp)
GACAGCGAGTTCTACGACCCAGCGG
LOC_Os10g03480
OsAffx.30257.1.S1_at--13--10571Chr10:1482672..1482696 (25 bp)
TTCTACGACCCAGCGGTGGACATGT
LOC_Os10g03480
OsAffx.30257.1.S1_at--530--4131Chr10:1482644..1482668 (25 bp)
CGCTTGGGTGCATCATGGCCGAGAT
LOC_Os10g03480
OsAffx.30257.1.S1_at--580--8631Chr10:1482640..1482664 (25 bp)
TGGGTGCATCATGGCCGAGATCCTC
LOC_Os10g03480
OsAffx.30257.1.S1_at--805--1311Chr10:1482566..1482590 (25 bp)
AGATGGCCGACATGCGACACCGGCT
LOC_Os10g03480
OsAffx.30257.1.S1_at--417--4491Chr10:1482561..1482585 (25 bp)
GCCGACATGCGACACCGGCTCGAGT
LOC_Os10g03480
OsAffx.30257.1.S1_at--196--3351Chr10:1482535..1482559 (25 bp)
CACGGGGACATGCAAGCTGTTCGAC
LOC_Os10g03480
OsAffx.30257.1.S1_at--850--7571Chr10:1482486..1482510 (25 bp)
GGGCGTGAGGTCCTCGCTGGGATGC
LOC_Os10g03480
Target Sequence 
CGGACAACATCCTCGTCGTGAACGGCGGCGGGCTCAAGCTGTGCGACTTCGGGTCGGCCACGCCGGTGAAGCCGCCGGGG
AAGCCGTACGAGGAGTCGCGGGTCGGCACGCTGCTCTACACCTCGCCGGAGCAGCTCGCCGACAGCGAGTTCTACGACCC
AGCGGTGGACATGTGGGCGCTTGGGTGCATCATGGCCGAGATCCTCACCGGCGGGCCGCTGTTCGACGACTCGTCGGAGG
AGAGGATGCTCAAGGAGATGGCCGACATGCGACACCGGCTCGAGTCCACGGGGACATGCAAGCTGTTCGACGAGCTGCCG
GAGTTGTCGGCGGCCGGGCGTGAGGTCCTCGCTGGGATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis