Browse Element(s) Details


OsAffx.6567.1.S1_x_at

Description gb:NM_194673.1
DB_XREF= gi:37530705
TID=OsAffx.6567.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0056A20.2), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0350011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03470NANA10+1473047..1476379transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03480OsAffx.30257.1.S1_x_at11/1110+1482400..1483317Protein kinase domain containing protein
LOC_Os10g03480OsAffx.30257.1.S1_at11/1110+1482400..1483317Protein kinase domain containing protein
LOC_Os10g03480OsAffx.30252.1.S1_x_at1/1110+1482400..1483317Protein kinase domain containing protein
LOC_Os10g03490OsAffx.30257.2.S1_at11/1110+1485427..1488816Protein kinase domain containing protein
LOC_Os10g03490Os.25139.1.A1_at8/1110+1485427..1488816Protein kinase domain containing protein
LOC_Os10g03500OsAffx.6567.2.S1_at11/1110+1498961..1499455hypothetical protein
LOC_Os10g03500OsAffx.6567.1.S1_x_at11/1110+1498961..1499455hypothetical protein
LOC_Os10g03510OsAffx.18106.1.S1_at11/1110+1500565..1500954hypothetical protein
LOC_Os10g03520OsAffx.18107.1.S1_at11/1110+1507807..1508585expressed protein
LOC_Os10g03530OsAffx.20776.1.S1_at11/1110+1509660..1510442CAF1 family ribonuclease containing protein
LOC_Os10g03540Os.3964.1.S1_at10/1110+1514711..1516444NHP2-like protein 1, putative, expressed
LOC_Os10g03550Os.20350.1.S1_at11/1110+1516948..1520338expressed protein
LOC_Os10g03560OsAffx.18108.1.S1_at11/1110+1523610..1524497CAF1 family ribonuclease containing protein
LOC_Os10g03560OsAffx.18108.1.S1_x_at11/1110+1523610..1524497CAF1 family ribonuclease containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6567.1.S1_x_at--826--4691Chr10:1499282..1499306 (25 bp)
GCGGCTCTGGCGGTGGTGCTCAGGA
LOC_Os10g03500
OsAffx.6567.1.S1_x_at--554--651Chr10:1499242..1499266 (25 bp)
ATGCAGAGAGGCAGATCTGGCGCCT
LOC_Os10g03500
OsAffx.6567.1.S1_x_at--274--1351Chr10:1499238..1499262 (25 bp)
AGAGAGGCAGATCTGGCGCCTCCTC
LOC_Os10g03500
OsAffx.6567.1.S1_x_at--922--9451Chr10:1499056..1499080 (25 bp)
TCTGGCAGCGGGTTCGCGCGGGCTT
LOC_Os10g03500
OsAffx.6567.1.S1_x_at--792--5151Chr10:1499029..1499053 (25 bp)
GCAAGGGCTCCAACACGGCCGGGCT
LOC_Os10g03500
OsAffx.6567.1.S1_x_at--587--7571Chr10:1499009..1499033 (25 bp)
GGGCTCCAGCGGTGGATTCAACAGC
LOC_Os10g03500
OsAffx.6567.1.S1_x_at--510--7511Chr10:1498998..1499022 (25 bp)
GTGGATTCAACAGCCAGTGGTTGAA
LOC_Os10g03500
OsAffx.6567.1.S1_x_at--843--2451Chr10:1498990..1499014 (25 bp)
AACAGCCAGTGGTTGAACAAGCTTT
LOC_Os10g03500
OsAffx.6567.1.S1_x_at--94--7911Chr10:1498980..1499004 (25 bp)
GGTTGAACAAGCTTTGGTGGCGCTT
LOC_Os10g03500
OsAffx.6567.1.S1_x_at--866--10711Chr10:1498978..1499002 (25 bp)
TTGAACAAGCTTTGGTGGCGCTTGG
LOC_Os10g03500
OsAffx.6567.1.S1_x_at--507--8451Chr10:1498963..1498987 (25 bp)
TGGCGCTTGGGTGCGGGCGGGCAGT
LOC_Os10g03500
Target Sequence 
GCGGCTCTGGCGGTGGTGCTCAGGAGGGCGGCAGGGGGGGATGCAGAGAGGCAGATCTGGCGCCTCCTCCTTCCTCCCGA
CCGCCGTCGCGCCGACACGGGTGGGCTTGGGGAGAGTTCCGGCACAGGGGGGCTCTGGCAGCGGGTTCGCGCGGGCTTCG
GCAAGGGCTCCAACACGGCCGGGCTCCAGCGGTGGATTCAACAGCCAGTGGTTGAACAAGCTTTGGTGGCGCTTGGGTGC
GGGCGGGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6567.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis