Browse Element(s) Details


OsAffx.20776.1.S1_at

Description tigr:9638.m00260
TID=OsAffx.20776.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CAF1 family ribonuclease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0353011/11CAF1 family ribonuclease containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03490OsAffx.30257.2.S1_at11/1110+1485427..1488816Protein kinase domain containing protein
LOC_Os10g03490Os.25139.1.A1_at8/1110+1485427..1488816Protein kinase domain containing protein
LOC_Os10g03500OsAffx.6567.2.S1_at11/1110+1498961..1499455hypothetical protein
LOC_Os10g03500OsAffx.6567.1.S1_x_at11/1110+1498961..1499455hypothetical protein
LOC_Os10g03510OsAffx.18106.1.S1_at11/1110+1500565..1500954hypothetical protein
LOC_Os10g03520OsAffx.18107.1.S1_at11/1110+1507807..1508585expressed protein
LOC_Os10g03530OsAffx.20776.1.S1_at11/1110+1509660..1510442CAF1 family ribonuclease containing protein
LOC_Os10g03540Os.3964.1.S1_at10/1110+1514711..1516444NHP2-like protein 1, putative, expressed
LOC_Os10g03550Os.20350.1.S1_at11/1110+1516948..1520338expressed protein
LOC_Os10g03560OsAffx.18108.1.S1_at11/1110+1523610..1524497CAF1 family ribonuclease containing protein
LOC_Os10g03560OsAffx.18108.1.S1_x_at11/1110+1523610..1524497CAF1 family ribonuclease containing protein
LOC_Os10g03570Os.47706.2.A1_at11/1110+1524942..1530551NB-ARC domain containing protein
LOC_Os10g03570OsAffx.30258.1.S1_at10/1110+1524942..1530551NB-ARC domain containing protein
LOC_Os10g03580OsAffx.30259.1.S1_at6/1110+1531991..1535233hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009451biological_processRNA modification
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20776.1.S1_at--303--431Chr10:1510185..1510209 (25 bp)
ATCTTCGTCTTCTCCTGAGCAGGAG
LOC_Os10g03530
OsAffx.20776.1.S1_at--38--1291Chr10:1510162..1510186 (25 bp)
AGATCGCGTGGGAGGTCGTCTTCTC
LOC_Os10g03530
OsAffx.20776.1.S1_at--311--9371Chr10:1510105..1510129 (25 bp)
TCGACTCCGTCGAGTTCCTCAAAAA
LOC_Os10g03530
OsAffx.20776.1.S1_at--1130--8391Chr10:1509956..1509980 (25 bp)
GGCGCCTACGACATGGGTTACCTGC
LOC_Os10g03530
OsAffx.20776.1.S1_at--711--2511Chr10:1509877..1509901 (25 bp)
AACTTGTCAAATCTCGGCTAGGCGG
LOC_Os10g03530
OsAffx.20776.1.S1_at--937--4691Chr10:1509856..1509880 (25 bp)
GCGGCGGCCGGATATTTGATTCAAA
LOC_Os10g03530
OsAffx.20776.1.S1_at--950--2471Chr10:1509820..1509844 (25 bp)
AACACGACCGTCAAGATCTGCGCAA
LOC_Os10g03530
OsAffx.20776.1.S1_at--299--2811Chr10:1509808..1509832 (25 bp)
AAGATCTGCGCAATGCCGGGTTGAG
LOC_Os10g03530
OsAffx.20776.1.S1_at--722--931Chr10:1509785..1509809 (25 bp)
AGGCACACGGCAGATGTTCTTGGCG
LOC_Os10g03530
OsAffx.20776.1.S1_at--1024--2211Chr10:1509724..1509748 (25 bp)
ACAAGAGCGTGGTAGCAGCTGCCAT
LOC_Os10g03530
OsAffx.20776.1.S1_at--886--9191Chr10:1509696..1509720 (25 bp)
TGCCACAATCCGGTCTCAGGGTGTT
LOC_Os10g03530
Target Sequence 
ATCTTCGTCTTCTCCTGAGCAGGAGATCGCGTGGGAGGTCGTCTTCTCCGACTTCGACGCCGGCCGCGACCCCCACGTCG
TCGACTCCGTCGAGTTCCTCAAAAACCAAGGCATCGACTTCGACCTCGCGCGGCAGATCGGCGTCACCTCCACGGCGTTC
GGAGAGAAGCTGCTCGCCATCCTGCCGCCGCCGTCGCGGCGTGGCGAGCTCACCTGGTCGGCGTTCGGCGGCGCCTACGA
CATGGGTTACCTGCTCAAGATGCTCACCGGCGGCCAGCCGTTGCCGGAGACGAGACAACAGTTTATGCAACTTGTCAAAT
CTCGGCTAGGCGGCGGCCGGATATTTGATTCAAAATATTTGGTAGAACACGACCGTCAAGATCTGCGCAATGCCGGGTTG
AGGCACACGGCAGATGTTCTTGGCGTGAGACAGCAGGAGGGGGTGAAGATGCTGGCTGGGCACAAGAGCGTGGTAGCAGC
TGCCATCTTTGCCACAATCCGGTCTCAGGGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis