Browse Element(s) Details


OsAffx.18108.1.S1_at

Description tigr:9638.m00263
TID=OsAffx.18108.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CAF1 family ribonuclease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0356011/11CAF1 family ribonuclease containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03500OsAffx.6567.2.S1_at11/1110+1498961..1499455hypothetical protein
LOC_Os10g03500OsAffx.6567.1.S1_x_at11/1110+1498961..1499455hypothetical protein
LOC_Os10g03510OsAffx.18106.1.S1_at11/1110+1500565..1500954hypothetical protein
LOC_Os10g03520OsAffx.18107.1.S1_at11/1110+1507807..1508585expressed protein
LOC_Os10g03530OsAffx.20776.1.S1_at11/1110+1509660..1510442CAF1 family ribonuclease containing protein
LOC_Os10g03540Os.3964.1.S1_at10/1110+1514711..1516444NHP2-like protein 1, putative, expressed
LOC_Os10g03550Os.20350.1.S1_at11/1110+1516948..1520338expressed protein
LOC_Os10g03560OsAffx.18108.1.S1_at11/1110+1523610..1524497CAF1 family ribonuclease containing protein
LOC_Os10g03560OsAffx.18108.1.S1_x_at11/1110+1523610..1524497CAF1 family ribonuclease containing protein
LOC_Os10g03570Os.47706.2.A1_at11/1110+1524942..1530551NB-ARC domain containing protein
LOC_Os10g03570OsAffx.30258.1.S1_at10/1110+1524942..1530551NB-ARC domain containing protein
LOC_Os10g03580OsAffx.30259.1.S1_at6/1110+1531991..1535233hypothetical protein
LOC_Os10g03590NANA10+1538899..1539105hypothetical protein
LOC_Os10g03600Os.46060.1.S1_at11/1110+1540926..1543953F-box domain containing protein, expressed
LOC_Os10g03610OsAffx.8542.1.S1_at11/1110+1545551..1546312DnaJ domain containing protein
LOC_Os10g03620Os.46552.1.S1_at9/1110+1546756..1549483F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009451biological_processRNA modification
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18108.1.S1_at--1035--1311Chr10:1523965..1523989 (25 bp)
AGATGGCGTGGCAGGTCGGCTTCTC
LOC_Os10g03560
OsAffx.18108.1.S1_at--307--5691Chr10:1523991..1524015 (25 bp)
GACTTCGACGTGAGCCAGTCCGCCG
LOC_Os10g03560
OsAffx.18108.1.S1_at--278--4491Chr10:1524033..1524057 (25 bp)
GCCGGCGTCGACTTGGAGCACCTGC
LOC_Os10g03560
OsAffx.18108.1.S1_at--138--9371Chr10:1524040..1524064 (25 bp)
TCGACTTGGAGCACCTGCGCGCGCG
LOC_Os10g03560
OsAffx.18108.1.S1_at--163--7571Chr10:1524132..1524156 (25 bp)
GGGCGGCTCACCTGGGTGGCGTTCG
LOC_Os10g03560
OsAffx.18108.1.S1_at--671--9151Chr10:1524244..1524268 (25 bp)
TGCGCGGGCACCTCGGCGTCGTGTA
LOC_Os10g03560
OsAffx.18108.1.S1_at--722--4471Chr10:1524387..1524411 (25 bp)
GCCGGCGAGAAGAGCCTGGTGGCGA
LOC_Os10g03560
OsAffx.18108.1.S1_at--272--8471Chr10:1524406..1524430 (25 bp)
TGGCGAGCCAGGTGTTCATTAGGAT
LOC_Os10g03560
OsAffx.18108.1.S1_at--158--4091Chr10:1524409..1524433 (25 bp)
CGAGCCAGGTGTTCATTAGGATGAC
LOC_Os10g03560
OsAffx.18108.1.S1_at--952--7731Chr10:1524416..1524440 (25 bp)
GGTGTTCATTAGGATGACTGGGCTC
LOC_Os10g03560
OsAffx.18108.1.S1_at--383--7991Chr10:1524427..1524451 (25 bp)
GGATGACTGGGCTCTTCTTCGCCTA
LOC_Os10g03560
Target Sequence 
AGATGGCGTGGCAGGTCGGCTTCTCCGACTTCGACGTGAGCCAGTCCGCCGTCGACGCCCTCCGCGCCGCCGGCGTCGAC
TTGGAGCACCTGCGCGCGCGCGGCGTCCCCGCGGCGGTGTTCGGGCAAGCGCTGCGGGTGTTCGACATCGTGTCCGCCGC
CAACCTCGGGCGGCTCACCTGGGTGGCGTTCGGCGGCCTCTACGACTTCGGCTTCCTCCTCAAGATGCTCGACGGCGGGC
GTCCGCTGCCGGAGACGGCCGAGGGGTTCGCGTCGCGGCTGCGCGGGCACCTCGGCGTCGTGTACGACGCCAAGTACGTG
GCGGCGCGGCTGCCGATGGACGGCGTCGAGCTGCGCGGCGGGCTGGTGAGGGTGGCGAGGGTGCTGGGCGCGCCGGCGGC
GGCGGTGGAGGAGCCCCGGCAGGCCGGCGAGAAGAGCCTGGTGGCGAGCCAGGTGTTCATTAGGATGACTGGGCTCTTCT
TCGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis