Browse Element(s) Details


OsAffx.8542.1.S1_at

Description tigr:9638.m00268
TID=OsAffx.8542.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DnaJ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0361011/11DnaJ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03560OsAffx.18108.1.S1_at11/1110+1523610..1524497CAF1 family ribonuclease containing protein
LOC_Os10g03560OsAffx.18108.1.S1_x_at11/1110+1523610..1524497CAF1 family ribonuclease containing protein
LOC_Os10g03570Os.47706.2.A1_at11/1110+1524942..1530551NB-ARC domain containing protein
LOC_Os10g03570OsAffx.30258.1.S1_at10/1110+1524942..1530551NB-ARC domain containing protein
LOC_Os10g03580OsAffx.30259.1.S1_at6/1110+1531991..1535233hypothetical protein
LOC_Os10g03590NANA10+1538899..1539105hypothetical protein
LOC_Os10g03600Os.46060.1.S1_at11/1110+1540926..1543953F-box domain containing protein, expressed
LOC_Os10g03610OsAffx.8542.1.S1_at11/1110+1545551..1546312DnaJ domain containing protein
LOC_Os10g03620Os.46552.1.S1_at9/1110+1546756..1549483F-box domain containing protein, expressed
LOC_Os10g03630NANA10+1558042..1558810hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8542.1.S1_at--973--1511Chr10:1545858..1545882 (25 bp)
AGCAGTTAAAGCTGATGCGCCTCCT
LOC_Os10g03610
OsAffx.8542.1.S1_at--1012--5751Chr10:1545992..1546016 (25 bp)
GACGTGGAACGCGACGCGCCAAAGC
LOC_Os10g03610
OsAffx.8542.1.S1_at--614--4411Chr10:1546082..1546106 (25 bp)
GCCACCCGCGACTACGGAGAAGAAC
LOC_Os10g03610
OsAffx.8542.1.S1_at--968--5951Chr10:1546098..1546122 (25 bp)
GAGAAGAACATGTCCGGCACGACGG
LOC_Os10g03610
OsAffx.8542.1.S1_at--970--2491Chr10:1546104..1546128 (25 bp)
AACATGTCCGGCACGACGGCTGCTG
LOC_Os10g03610
OsAffx.8542.1.S1_at--652--9031Chr10:1546127..1546151 (25 bp)
TGCACGGAGAACTACAGGTCGACGT
LOC_Os10g03610
OsAffx.8542.1.S1_at--389--1431Chr10:1546134..1546158 (25 bp)
AGAACTACAGGTCGACGTACCGGAG
LOC_Os10g03610
OsAffx.8542.1.S1_at--465--751Chr10:1546202..1546226 (25 bp)
ATGTACTTCGCCTTCTGCCCATTCT
LOC_Os10g03610
OsAffx.8542.1.S1_at--864--9151Chr10:1546217..1546241 (25 bp)
TGCCCATTCTGTGTCGCCAAGGCGG
LOC_Os10g03610
OsAffx.8542.1.S1_at--602--5071Chr10:1546243..1546267 (25 bp)
GCAGCCCAAGAACGCCCAGTGGCTT
LOC_Os10g03610
OsAffx.8542.1.S1_at--770--1431Chr10:1546251..1546275 (25 bp)
AGAACGCCCAGTGGCTTGACATGGA
LOC_Os10g03610
Target Sequence 
AGCAGTTAAAGCTGATGCGCCTCCTCACGCACCCCGACAAGAACCGCTCCGCCGCCGCCGACGGCGCCTTCAAGCTCGTC
ACCGAGGCGTGGGAGGCCATCAGCTCCGGCCACGCGCCCTTCTTCTCCGGCGACGACGTGGAACGCGACGCGCCAAAGCC
GCCGCCACCGCCAAGACGCCAGAGTCCGGCGCCGCCGCCGCCGCGGCAGCACAGCCAACGCCGCGCCACCCGCGACTACG
GAGAAGAACATGTCCGGCACGACGGCTGCTGCACGGAGAACTACAGGTCGACGTACCGGAGGGGGAGGAGAAGGCCGTCT
CCGGCGGCGGCGGCGGCGAGCAAGATGTACTTCGCCTTCTGCCCATTCTGTGTCGCCAAGGCGGCGCAGCCCAAGAACGC
CCAGTGGCTTGACATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8542.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis