Browse Element(s) Details


Os.46060.1.S1_at

Description gb:AK101708.1
DB_XREF= gi:32986917
TID=Os.46060.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46060 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0056A20.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033060K15, full insert sequence.
FL= gb:AK101708.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0360011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03540Os.3964.1.S1_at10/1110+1514711..1516444NHP2-like protein 1, putative, expressed
LOC_Os10g03550Os.20350.1.S1_at11/1110+1516948..1520338expressed protein
LOC_Os10g03560OsAffx.18108.1.S1_at11/1110+1523610..1524497CAF1 family ribonuclease containing protein
LOC_Os10g03560OsAffx.18108.1.S1_x_at11/1110+1523610..1524497CAF1 family ribonuclease containing protein
LOC_Os10g03570Os.47706.2.A1_at11/1110+1524942..1530551NB-ARC domain containing protein
LOC_Os10g03570OsAffx.30258.1.S1_at10/1110+1524942..1530551NB-ARC domain containing protein
LOC_Os10g03580OsAffx.30259.1.S1_at6/1110+1531991..1535233hypothetical protein
LOC_Os10g03590NANA10+1538899..1539105hypothetical protein
LOC_Os10g03600Os.46060.1.S1_at11/1110+1540926..1543953F-box domain containing protein, expressed
LOC_Os10g03610OsAffx.8542.1.S1_at11/1110+1545551..1546312DnaJ domain containing protein
LOC_Os10g03620Os.46552.1.S1_at9/1110+1546756..1549483F-box domain containing protein, expressed
LOC_Os10g03630NANA10+1558042..1558810hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46060.1.S1_at--380--851Chr10:1541995..1542019 (25 bp)
ATGGCATGCTTGCTATGTCCGTTAG
LOC_Os10g03600
Os.46060.1.S1_at--890--591Chr10:1542070..1542094 (25 bp)
ATGAGGTCTGGGTGTTCCGGTACAA
LOC_Os10g03600
Os.46060.1.S1_at--889--391Chr10:1542117..1542141 (25 bp)
ATCAGGCGTTTCCAAGATCAGGGTG
LOC_Os10g03600
Os.46060.1.S1_at--775--6311Chr10:1542252..1542276 (25 bp)
GATGACTTGCCAGCAATCAGTCCTC
LOC_Os10g03600
Os.46060.1.S1_at--632--951Chr10:1542286..1542310 (25 bp)
AGGAAAGCCTTATTCAGCACGCCTT
LOC_Os10g03600
Os.46060.1.S1_at--445--6371Chr10:1542344..1542368 (25 bp)
GATCCATCTCATTTTGTGCCATGTG
LOC_Os10g03600
Os.46060.1.S1_at--287--271Chr10:1543827..1543851 (25 bp)
ATATGTTCTTCGTTGCGCTTACTAA
LOC_Os10g03600
Os.46060.1.S1_at--1105--8731Chr10:1543858..1543882 (25 bp)
TGTAAGATGTACCTAGCCGTCGCTG
LOC_Os10g03600
Os.46060.1.S1_at--691--9991Chr10:1543871..1543895 (25 bp)
TAGCCGTCGCTGTTTGAGGTTACTC
LOC_Os10g03600
Os.46060.1.S1_at--836--9911Chr10:1543891..1543915 (25 bp)
TACTCCAGCATTTGTAGCTCTCTGA
LOC_Os10g03600
Os.46060.1.S1_at--136--1591Chr10:1543906..1543930 (25 bp)
AGCTCTCTGACAACATTGTTCTGTT
LOC_Os10g03600
Target Sequence 
ATGGCATGCTTGCTATGTCCGTTAGCAAAGAACGTGTGATGGACATGAGCATCTTCATGTTGGAAGACTACGATCATGAG
GTCTGGGTGTTCCGGTACAAGATTAAGCTGCCAACAATGGAGATCAGGCGTTTCCAAGATCAGGGTGATTGGTGGGCGGA
GGTTGTGTCCGAGGAGGGAGATATTCTTGTCAGTTGTTTTGGCTGGTTGTTGCACTGTGACAANAAGGGTAATTTGGTGT
CCAAATTCCAGTACAATGATGACTTGCCAGCAATCAGTCCTCATAGAATCAAGGAAAGCCTTATTCAGCACGCCTTTTTC
AAGGAAGGAACAAAGAAATGATCCTGATTGATCCATCTCATTTTGTGCCATGTGAAACGATGCTGAAGAGAACTTTCCTA
TGTGAANGACACCGGTGCAAAGACTAAACTTTATATGTTCTTCGTTGCGCTTACTAATTTCTATGTAAGATGTACCTAGC
CGTCGCTGTTTGAGGTTACTCCAGCATTTGTAGCTCTCTGACAACATTGTTCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis