Browse Element(s) Details


Os.3964.1.S1_at

Description gb:AK121991.1
DB_XREF= gi:37991614
TID=Os.3964.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.3964 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribosomal protein L7Ae-like (OSJNBa0056A20.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033109K13, full insert sequence.
FL= gb:AK121991.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0354010/11NHP2-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03500OsAffx.6567.2.S1_at11/1110+1498961..1499455hypothetical protein
LOC_Os10g03500OsAffx.6567.1.S1_x_at11/1110+1498961..1499455hypothetical protein
LOC_Os10g03510OsAffx.18106.1.S1_at11/1110+1500565..1500954hypothetical protein
LOC_Os10g03520OsAffx.18107.1.S1_at11/1110+1507807..1508585expressed protein
LOC_Os10g03530OsAffx.20776.1.S1_at11/1110+1509660..1510442CAF1 family ribonuclease containing protein
LOC_Os10g03540Os.3964.1.S1_at10/1110+1514711..1516444NHP2-like protein 1, putative, expressed
LOC_Os10g03550Os.20350.1.S1_at11/1110+1516948..1520338expressed protein
LOC_Os10g03560OsAffx.18108.1.S1_at11/1110+1523610..1524497CAF1 family ribonuclease containing protein
LOC_Os10g03560OsAffx.18108.1.S1_x_at11/1110+1523610..1524497CAF1 family ribonuclease containing protein
LOC_Os10g03570Os.47706.2.A1_at11/1110+1524942..1530551NB-ARC domain containing protein
LOC_Os10g03570OsAffx.30258.1.S1_at10/1110+1524942..1530551NB-ARC domain containing protein
LOC_Os10g03580OsAffx.30259.1.S1_at6/1110+1531991..1535233hypothetical protein
LOC_Os10g03590NANA10+1538899..1539105hypothetical protein
LOC_Os10g03600Os.46060.1.S1_at11/1110+1540926..1543953F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3964.1.S1_at--677--5271Chr10:1515831..1515855 (25 bp)
GAATGTGCCATACGTCTTTGTCCCA
LOC_Os10g03540
Os.3964.1.S1_at--581--10251Chr10:1515847..1515871 (25 bp)
TTTGTCCCATCAAAGCAAGCTCTCG
LOC_Os10g03540
Os.3964.1.S1_at--45--2351Chr10:1515858..1515882 (25 bp)
AAAGCAAGCTCTCGGCCGTGCATGT
LOC_Os10g03540
Os.3964.1.S1_at--977--9431Chr10:1515910..1515934 (25 bp)
TCGGTGACCAGCAATGAGGCCAGCA
LOC_Os10g03540
Os.3964.1.S1_at--71--7811Chr10:1516074..1516098 (25 bp)
GGTCGCTATTGAGAAGCTCCTGATC
LOC_Os10g03540
Os.3964.1.S1_at--274--2831Chr10:1516120..1516144 (25 bp)
GAAGTTCAACCATGGCGTTTTCGGC
LOC_Os10g03540
Os.3964.1.S1_at--399--7751Chr10:1516186..1516210 (25 bp)
GGTGTCTCTGTGTTGCAGATACCTG
LOC_Os10g03540
Os.3964.1.S1_at--957--5611Chr10:1516244..1516268 (25 bp)
GACAGTTTAGTCAGCTCCCAGTATT
LOC_Os10g03540
Os.3964.1.S1_at--985--3851Chr10:1516273..1516297 (25 bp)
CTGAGAATTTTCTGCCATTAATCTT
LOC_Os10g03540
Os.3964.1.S1_at--490--10371Chr10:1516376..1516400 (25 bp)
TTTTCGGTCAAACTGGCACTAACAT
LOC_Os10g03540
Os.3964.1.S1_at--248--2251Chr09:6369200..6369342 (24 bp)
AAATTCCATAATCGAGTTCTCCAGT
NONE
Target Sequence 
GAATGTGCCATACGTCTTTGTCCCATCAAAGCAAGCTCTCGGCCGTGCATGTGGGGTGACGAGGCCCGTGATCGCCTGCT
CGGTGACCAGCAATGAGGCCAGCAACTTGAGAGATCCAATCNATAACCTCAAGGTCGCTATTGAGAAGCTCCTGATCTGA
TCAGTGATCTGATGAGGNTGAAGTTCAACCATGGCGTTTTCGGCGTGAAGGGCCTCACAAGGAGCCGGAGGCCTGGACTG
GTGATGGTGTCTCTGTGTTGCAGATACCTGNTGGTTCTAAGTTCCTTTTATATGTNTTTTTNGCCAGACAGTTTAGTCAG
CTCCCAGTATTATGTCTGAGAATTTTCTGCCATTAATCTTAAAGAGCAGTGATTGATCAGTTGAATTATTGAGTTCTCCA
ATGAATTGATGTGTTCTGAGCAGGGTTGACAGTATTTGTTTTCGGTCAAACTGGCACTAACATGAATTAGTTTCGTCAGC
GAAATTCCATAATCGAGTTCTCCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis