Browse Element(s) Details


OsAffx.30258.1.S1_at

Description tigr:9638.m00264
TID=OsAffx.30258.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0357010/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03510OsAffx.18106.1.S1_at11/1110+1500565..1500954hypothetical protein
LOC_Os10g03520OsAffx.18107.1.S1_at11/1110+1507807..1508585expressed protein
LOC_Os10g03530OsAffx.20776.1.S1_at11/1110+1509660..1510442CAF1 family ribonuclease containing protein
LOC_Os10g03540Os.3964.1.S1_at10/1110+1514711..1516444NHP2-like protein 1, putative, expressed
LOC_Os10g03550Os.20350.1.S1_at11/1110+1516948..1520338expressed protein
LOC_Os10g03560OsAffx.18108.1.S1_at11/1110+1523610..1524497CAF1 family ribonuclease containing protein
LOC_Os10g03560OsAffx.18108.1.S1_x_at11/1110+1523610..1524497CAF1 family ribonuclease containing protein
LOC_Os10g03570Os.47706.2.A1_at11/1110+1524942..1530551NB-ARC domain containing protein
LOC_Os10g03570OsAffx.30258.1.S1_at10/1110+1524942..1530551NB-ARC domain containing protein
LOC_Os10g03580OsAffx.30259.1.S1_at6/1110+1531991..1535233hypothetical protein
LOC_Os10g03590NANA10+1538899..1539105hypothetical protein
LOC_Os10g03600Os.46060.1.S1_at11/1110+1540926..1543953F-box domain containing protein, expressed
LOC_Os10g03610OsAffx.8542.1.S1_at11/1110+1545551..1546312DnaJ domain containing protein
LOC_Os10g03620Os.46552.1.S1_at9/1110+1546756..1549483F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30258.1.S1_at--14--8651Chr10:1526982..1527006 (25 bp)
TGGGAATATCACATGTTCACGAAAC
LOC_Os10g03570
OsAffx.30258.1.S1_at--741--2111Chr10:1526210..1526234 (25 bp)
ACATGTGGGTTGATCAAGTGCGACC
LOC_Os10g03570
OsAffx.30258.1.S1_at--883--2271Chr10:1526174..1526198 (25 bp)
AAATCCTTGGAGAACTGGCAGCATA
LOC_Os10g03570
OsAffx.30258.1.S1_at--898--3751NONE
CTCTTGGTGCACGAGCTAGCAGGCA
NONE
OsAffx.30258.1.S1_at--451--1571Chr10:1525153..1525177 (25 bp)
AGCTAGCAGGCAGCATCTTCCTCGA
LOC_Os10g03570
OsAffx.30258.1.S1_at--731--4271Chr10:1525134..1525158 (25 bp)
CCTCGAGATCGACATTACAATTGAC
LOC_Os10g03570
OsAffx.30258.1.S1_at--142--7091Chr10:1525104..1525128 (25 bp)
GTCAATGTATGCTGAACTGGCTGTA
LOC_Os10g03570
OsAffx.30258.1.S1_at--416--1951Chr10:1525089..1525113 (25 bp)
ACTGGCTGTAATTGGATTCGTTTCA
LOC_Os10g03570
OsAffx.30258.1.S1_at--860--3051Chr10:1525055..1525079 (25 bp)
AATCGGATGGATGCATTACATTCAT
LOC_Os10g03570
OsAffx.30258.1.S1_at--189--5411Chr10:1525011..1525035 (25 bp)
GAAGCTCACAATCTCCACATATTTT
LOC_Os10g03570
OsAffx.30258.1.S1_at--45--6631Chr10:1524974..1524998 (25 bp)
GTTGGATTCATCTACTTTGTATCTG
LOC_Os10g03570
Target Sequence 
TGGGAATATCACATGTTCACGAAACAAGACATGTGGGTTGATCAAGTGCGACCGGGGGATATACAAATCCTTGGAGAACT
GGCAGCATAGAGGAGCGTGTAGTGGAGAGATTTGTGGTCAGCACCAACGCCTTCCAACGCGCGACAGAGTGCCATCCATG
TTCCCACGAGGAGCCATGCCGAGGGTTAGGTACCTTGAGTTCAGCCTCCGAGCATGGGACAACGACATGGCCATCGGTAA
TGGTAGCAGTGGTGATCTCGACTTGGCCATGGGACATCTCCCTTCACTGGAGCGTGTGAGCGTTACGCTCTTGGTGCACG
AGCTAGCAGGCAGCATCTTCCTCGAGATCGACATTACAATTGACAATATGTCAATGTATGCTGAACTGGCTGTAATTGGA
TTCGTTTCAAATGATAGAAATCGGATGGATGCATTACATTCATCAGGGGACGACGTCGAGACGAAGCTCACAATCTCCAC
ATATTTTGATATGGTTATTGTTGGATTCATCTACTTTGTATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30258.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis