Browse Element(s) Details


OsAffx.18107.1.S1_at

Description tigr:9638.m00259
TID=OsAffx.18107.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0352011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03480OsAffx.30257.1.S1_x_at11/1110+1482400..1483317Protein kinase domain containing protein
LOC_Os10g03480OsAffx.30257.1.S1_at11/1110+1482400..1483317Protein kinase domain containing protein
LOC_Os10g03480OsAffx.30252.1.S1_x_at1/1110+1482400..1483317Protein kinase domain containing protein
LOC_Os10g03490OsAffx.30257.2.S1_at11/1110+1485427..1488816Protein kinase domain containing protein
LOC_Os10g03490Os.25139.1.A1_at8/1110+1485427..1488816Protein kinase domain containing protein
LOC_Os10g03500OsAffx.6567.2.S1_at11/1110+1498961..1499455hypothetical protein
LOC_Os10g03500OsAffx.6567.1.S1_x_at11/1110+1498961..1499455hypothetical protein
LOC_Os10g03510OsAffx.18106.1.S1_at11/1110+1500565..1500954hypothetical protein
LOC_Os10g03520OsAffx.18107.1.S1_at11/1110+1507807..1508585expressed protein
LOC_Os10g03530OsAffx.20776.1.S1_at11/1110+1509660..1510442CAF1 family ribonuclease containing protein
LOC_Os10g03540Os.3964.1.S1_at10/1110+1514711..1516444NHP2-like protein 1, putative, expressed
LOC_Os10g03550Os.20350.1.S1_at11/1110+1516948..1520338expressed protein
LOC_Os10g03560OsAffx.18108.1.S1_at11/1110+1523610..1524497CAF1 family ribonuclease containing protein
LOC_Os10g03560OsAffx.18108.1.S1_x_at11/1110+1523610..1524497CAF1 family ribonuclease containing protein
LOC_Os10g03570Os.47706.2.A1_at11/1110+1524942..1530551NB-ARC domain containing protein
LOC_Os10g03570OsAffx.30258.1.S1_at10/1110+1524942..1530551NB-ARC domain containing protein
LOC_Os10g03580OsAffx.30259.1.S1_at6/1110+1531991..1535233hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18107.1.S1_at--1029--2851Chr10:1507848..1507872 (25 bp)
AAGTGCCGAACAAAGCCATCAGGAG
LOC_Os10g03520
OsAffx.18107.1.S1_at--847--651Chr10:1507883..1508125 (25 bp)
ATGAACTGAAATGGCCGGACGACGG
LOC_Os10g03520
OsAffx.18107.1.S1_at--631--4751Chr10:1508264..1508288 (25 bp)
GCTGAAGTGGGCGACCAACCTTGAG
LOC_Os10g03520
OsAffx.18107.1.S1_at--1075--10751Chr10:1508284..1508308 (25 bp)
TTGAGGTCGCCTGCATTGTTGAGGA
LOC_Os10g03520
OsAffx.18107.1.S1_at--218--10771Chr10:1508323..1508347 (25 bp)
TTGATGCCGCGATTGTACACGCCAC
LOC_Os10g03520
OsAffx.18107.1.S1_at--420--7011Chr10:1508337..1508361 (25 bp)
GTACACGCCACGAGAGTGGTAGTAC
LOC_Os10g03520
OsAffx.18107.1.S1_at--130--7511Chr10:1508352..1508376 (25 bp)
GTGGTAGTACCGGACAGCAAAGATA
LOC_Os10g03520
OsAffx.18107.1.S1_at--1148--2311Chr10:1508385..1508409 (25 bp)
AAAGTAGTGTTGTGCGAGGTCCTCT
LOC_Os10g03520
OsAffx.18107.1.S1_at--444--4071Chr10:1508399..1508423 (25 bp)
CGAGGTCCTCTATCATGCGGCTGGA
LOC_Os10g03520
OsAffx.18107.1.S1_at--802--411Chr10:1508410..1508434 (25 bp)
ATCATGCGGCTGGACGCGTCGAGCA
LOC_Os10g03520
OsAffx.18107.1.S1_at--739--5971Chr10:1508437..1508461 (25 bp)
GAGAACAGCTAGTCGCCAGCGGCGA
LOC_Os10g03520
Target Sequence 
AAGTGCCGAACAAAGCCATCAGGAGCTCGGGGAAGATGAACTGAAATGGCCGGACGACGGGTGGGGAGGAGGCCGACAGG
GTAAGGCGGGAGAGGAGGAGGGCATCGGGGGCCAGCAACGCGGCGATGGGCGACGCCGTGGCGGCGGCGGCGACGCAGGA
AAAGGGTTGTCGCAGAGGGTGTGGTGGAGGGCGCCGAGGCTGAAGTGGGCGACCAACCTTGAGGTCGCCTGCATTGTTGA
GGAGGAGATTCTCCGGCTTGATGCCGCGATTGTACACGCCACGAGAGTGGTAGTACCGGACAGCAAAGATAAGCTTCCGA
AAGTAGTGTTGTGCGAGGTCCTCTATCATGCGGCTGGACGCGTCGAGCAGGGAGAACAGCTAGTCGCCAGCGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis