Browse Element(s) Details


OsAffx.3027.1.S1_at

Description tigr:9630.m04956
TID=OsAffx.3027.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5058011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50550Os.6049.1.S1_at11/112+30855789..30865302Dynamin-2B, putative, expressed
LOC_Os02g50550Os.52837.1.S1_x_at1/112+30855789..30865302Dynamin-2B, putative, expressed
LOC_Os02g50550Os.52837.1.S1_at1/112+30855789..30865302Dynamin-2B, putative, expressed
LOC_Os02g50560Os.50871.1.S1_at11/112+30866902..30877002DEAD/DEAH box helicase, putative, expressed
LOC_Os02g50570Os.5163.1.S1_at11/112+30876083..30880539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g50580OsAffx.3027.1.S1_at11/112+30885429..30886141hypothetical protein
LOC_Os02g50590OsAffx.24814.1.S1_at11/112+30889298..30892658hypothetical protein
LOC_Os02g50600Os.26079.1.S1_at11/112+30893712..30895431glycosyl transferase family 8 protein, putative, expressed
LOC_Os02g50610Os.31535.1.A1_at1/112+30898909..30903290hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3027.1.S1_at--200--9913Chr11:3566732..3566755 (24 bp)
TACTCCCGAGGATTATGTTGCCATC
NONE
OsAffx.3027.1.S1_at--675--9192Chr04:6691827..6691851 (25 bp)
TGCCATCTGCAAATCTCTGCGCAAT
NONE
OsAffx.3027.1.S1_at--830--5172Chr12:2745495..2745519 (25 bp)
GCAATCCCTGTGCTTCGGAAGATGG
NONE
OsAffx.3027.1.S1_at--354--1131Chr02:30885803..30885827 (25 bp)
AGTCCTCCACGGTGCAAGCTGGAGA
LOC_Os02g50580
OsAffx.3027.1.S1_at--25--8072Chr04:6691917..6691941 (25 bp)
GGAGACTGCCTCGACGGAGCTTGAC
NONE
OsAffx.3027.1.S1_at--193--3432Chr04:6692004..6692024 (21 bp)
CAGAGAGTGTTGGTCTGCTCCATTG
NONE
OsAffx.3027.1.S1_at--703--3351Chr02:30885577..30885601 (25 bp)
CACGCATCTGGCCATCTGGAGAGGA
LOC_Os02g50580
OsAffx.3027.1.S1_at--914--6372Chr04:6692161..6692439 (25 bp)
GATCCGATCGAGTTCCCAAAATTTT
NONE
OsAffx.3027.1.S1_at--969--10053Chr04:6692187..6692211 (25 bp)
TATGCGAAAAGACCACCTTACCCTT
NONE
OsAffx.3027.1.S1_at--1006--7831Chr02:30885483..30885507 (25 bp)
GGTACCACCCAAACGACTAAGCGAT
LOC_Os02g50580
OsAffx.3027.1.S1_at--44--1531Chr02:30885464..30885488 (25 bp)
AGCGATACCGGGTGGTACCGATCAA
LOC_Os02g50580
Target Sequence 
TACTCCCGAGGATTATGTTGCCATCTGCAAATCTCTGCGCAATCCCTGTGCTTCGGAAGATGGCATGAGACGGCAGCCGT
CGCGGAGGAGTCCTCCACGGTGCAAGCTGGAGACTGCCTCGACGGAGCTTGACCTTGCCATCGCCAACATGGGCACGACC
CTCCACCTCTCGCTGAGGCATATCGCCCAGAGAGTGTTGGTCTGCTCCATTGACGATGGCCCCCATGTGTTCTCGTCTTG
GTCCGGCCCATCTGCGGATGGGGACGACACCACGGCGGCGACGGCCAGCCAAGGTCACACAACGGCGGCGACGGCACGCA
TCTGGCCATCTGGAGAGGAAAGACGTCGATCCGATCGAGTTCCCAAAATTTTCTATGCGAAAAGACCACCTTACCCTTCC
ACCCGTGCGGTACCACCCAAACGACTAAGCGATACCGGGTGGTACCGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3027.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis