Browse Element(s) Details


OsAffx.30270.1.S1_at

Description tigr:9638.m00314
TID=OsAffx.30270.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0406011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04040Os.46012.2.S1_x_at5/1110+1832146..1836361retrotransposon protein, putative, unclassified
LOC_Os10g04040Os.27088.1.A1_x_at3/1110+1832146..1836361retrotransposon protein, putative, unclassified
LOC_Os10g04040Os.46012.3.S1_x_at3/1110+1832146..1836361retrotransposon protein, putative, unclassified
LOC_Os10g04050Os.27408.1.S2_at11/1110+1842381..1850220transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g04050Os.27408.1.S1_at11/1110+1842381..1850220transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g04060OsAffx.30270.1.S1_at11/1110+1855157..1859683NB-ARC domain containing protein
LOC_Os10g04074Os.35046.2.S1_x_at11/1110+1864083..1871881retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g04074Os.35046.1.S1_at11/1110+1864083..1871881retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g04074Os.14086.1.S1_s_at11/1110+1864083..1871881retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g04074Os.46478.1.S1_at10/1110+1864083..1871881retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g04090Os.46735.1.S1_at11/1110+1874201..1878141NB-ARC domain containing protein, expressed
LOC_Os10g04090OsAffx.8602.1.S1_s_at11/1110+1874201..1878141NB-ARC domain containing protein, expressed
LOC_Os10g04090OsAffx.8602.1.S1_x_at6/1110+1874201..1878141NB-ARC domain containing protein, expressed
LOC_Os10g04100NANA10+1880224..1880581hypothetical protein
LOC_Os10g04110Os.47753.1.S1_at11/1110+1881932..1886668NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30270.1.S1_at--252--572Chr10:1856349..1856373 (25 bp)
ATCCTCTGCCATGCCTAGAAATGAT
LOC_Os10g04060
OsAffx.30270.1.S1_at--1103--7231Chr10:1856276..1856300 (25 bp)
GTCCCTCACGTCACTAGAATTTCAT
LOC_Os10g04060
OsAffx.30270.1.S1_at--287--191Chr10:1856258..1856282 (25 bp)
ATTTCATTCTTGTCCGAAGCTTCAG
LOC_Os10g04060
OsAffx.30270.1.S1_at--1059--1591Chr10:1856220..1856244 (25 bp)
AGCTGCATGCCCTGAAGTTTTTGGA
LOC_Os10g04060
OsAffx.30270.1.S1_at--1058--8912Chr10:1872169..1872193 (25 bp)
TGAGCTGCAAACGTCTAGCATCCTT
NONE
OsAffx.30270.1.S1_at--1013--10011Chr10:1856106..1856130 (25 bp)
TAGCATCCTTAGCATGTGGTCCAGA
LOC_Os10g04060
OsAffx.30270.1.S1_at--447--1571Chr10:1856080..1856104 (25 bp)
AGCTACTCATCTCTTTCAACTATTG
LOC_Os10g04060
OsAffx.30270.1.S1_at--425--10731Chr10:1856058..1856082 (25 bp)
TTGCTATTCGATATTGCCCAGCCAT
LOC_Os10g04060
OsAffx.30270.1.S1_at--364--8991Chr10:1856028..1856052 (25 bp)
TGAAGCCGCTATATGAACGCCTTAG
LOC_Os10g04060
OsAffx.30270.1.S1_at--424--2611Chr10:1856013..1856037 (25 bp)
AACGCCTTAGGCCACGGTTGGATAT
LOC_Os10g04060
OsAffx.30270.1.S1_at--373--1351Chr10:1855978..1856002 (25 bp)
AGAGATTTGTCACATGCCCATGCAA
LOC_Os10g04060
Target Sequence 
ATCCTCTGCCATGCCTAGAAATGATACATATCTCTTTCAATGATAAAATGGTAGAACTTCAGAACCTACCACCGTCCCTC
ACGTCACTAGAATTTCATTCTTGTCCGAAGCTTCAGTCTCTATCAGGGCAGCTGCATGCCCTGAAGTTTTTGGATATTAG
GTGCTGCAATAAACTGGAGTCACTGAATTGTTTGGGAGACCTGCCATCATTAGAAAGACTTTGTCTTGTGAGCTGCAAAC
GTCTAGCATCCTTAGCATGTGGTCCAGAGAGCTACTCATCTCTTTCAACTATTGCTATTCGATATTGCCCAGCCATGAAT
ATGAAGCCGCTATATGAACGCCTTAGGCCACGGTTGGATATTCTTAAGGAAAGAGATTTGTCACATGCCCATGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30270.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis