Browse Element(s) Details


OsAffx.30317.1.S1_at

Description tigr:9638.m00576
TID=OsAffx.30317.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0660011/11hypothetical protein
LOC_Os10g040301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06560OsAffx.30320.1.S1_x_at2/1110+3361680..3362657Protein kinase domain containing protein
LOC_Os10g06560Os.46721.1.S1_x_at2/1110+3361680..3362657Protein kinase domain containing protein
LOC_Os10g06570OsAffx.30316.1.S1_at11/1110+3371345..3372441hypothetical protein
LOC_Os10g06580Os.46721.1.S1_x_at11/1110+3378091..3379068Protein kinase domain containing protein, expressed
LOC_Os10g06580OsAffx.30320.2.S1_x_at2/1110+3378091..3379068Protein kinase domain containing protein, expressed
LOC_Os10g06580OsAffx.30320.1.S1_x_at1/1110+3378091..3379068Protein kinase domain containing protein, expressed
LOC_Os10g06600OsAffx.30317.1.S1_at11/1110+3381947..3382384hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30317.1.S1_at--216--8491Chr10:3382143..3382167 (25 bp)
TGGCGGCTAGTGAAGCCGTAGCCAC
LOC_Os10g06600
OsAffx.30317.1.S1_at--1159--4671Chr10:3382141..3382165 (25 bp)
GCGGCTAGTGAAGCCGTAGCCACCA
LOC_Os10g06600
OsAffx.30317.1.S1_at--947--4851Chr10:3382138..3382162 (25 bp)
GCTAGTGAAGCCGTAGCCACCAAGG
LOC_Os10g06600
OsAffx.30317.1.S1_at--322--3691Chr10:3382137..3382161 (25 bp)
CTAGTGAAGCCGTAGCCACCAAGGC
LOC_Os10g06600
OsAffx.30317.1.S1_at--986--10031Chr10:3382136..3382160 (25 bp)
TAGTGAAGCCGTAGCCACCAAGGCC
LOC_Os10g06600
OsAffx.30317.1.S1_at--210--1091Chr10:3382135..3382159 (25 bp)
AGTGAAGCCGTAGCCACCAAGGCCT
LOC_Os10g06600
OsAffx.30317.1.S1_at--447--8991Chr10:3382133..3382157 (25 bp)
TGAAGCCGTAGCCACCAAGGCCTCT
LOC_Os10g06600
OsAffx.30317.1.S1_at--1003--5391Chr10:3382132..3382156 (25 bp)
GAAGCCGTAGCCACCAAGGCCTCTT
LOC_Os10g06600
OsAffx.30317.1.S1_at--1111--8171Chr10:3382036..3382060 (25 bp)
GGAAGCGACAGCGGACGAGCACGTG
LOC_Os10g06600
OsAffx.30317.1.S1_at--329--5951Chr10:3382020..3382044 (25 bp)
GAGCACGTGTGCGTCAGTGCGGCGG
LOC_Os10g06600
OsAffx.30317.1.S1_at--588--1913Chr10:1826216..1826626 (25 bp)
ACGTGTGCGTCAGTGCGGCGGCGGC
LOC_Os10g04030
Target Sequence 
TGGCGGCTAGTGAAGCCGTAGCCACCAAGGCCTCTTCGCCGTCGGGAGCGGGGTCACAGGGGGCAGGGGACCTCTTCGCC
GTCGGGAGCGGGGGCGAAGGGGGCAGAGGAAGCGACAGCGGACGAGCACGTGTGCGTCAGTGCGGCGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30317.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis