Browse Element(s) Details


OsAffx.30330.1.S1_at

Description tigr:9638.m00655
TID=OsAffx.30330.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g073809/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07340Os.22675.1.S1_at11/1110+3852387..3855436expressed protein
LOC_Os10g07340Os.22675.1.S2_at10/1110+3852387..3855436expressed protein
LOC_Os10g07350OsAffx.18166.1.S1_at11/1110+3858087..3859531hypothetical protein
LOC_Os10g07370Os.25139.1.A1_at5/1110+3862435..3868801hypothetical protein
LOC_Os10g07370OsAffx.29612.1.S1_at1/1110+3862435..3868801hypothetical protein
LOC_Os10g07380OsAffx.30330.1.S1_at9/1110+3875801..3880800expressed protein
LOC_Os10g07390OsAffx.30331.1.S1_at11/1110+3887830..3889046hypothetical protein
LOC_Os10g07400Os.11024.1.S1_at11/1110+3892249..3896819NB-ARC domain containing protein, expressed
LOC_Os10g07410OsAffx.380.1.S1_at11/1110+3901025..3907698retrotransposon protein, putative, unclassified
LOC_Os10g07410OsAffx.8801.1.S1_at3/1110+3901025..3907698retrotransposon protein, putative, unclassified
LOC_Os10g07410OsAffx.1283.1.S1_at2/1110+3901025..3907698retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30330.1.S1_at--403--4471Chr10:3880003..3880027 (25 bp)
GCCTGAGGTCTGGTACTCGGACGTA
LOC_Os10g07380
OsAffx.30330.1.S1_at--537--9911NONE
TACTCGGACGTACACAGTGCACTTA
NONE
OsAffx.30330.1.S1_at--939--7031NONE
GTACACAGTGCACTTAATTTGGATG
NONE
OsAffx.30330.1.S1_at--377--5311Chr10:3876722..3876746 (25 bp)
GAAGGATTCAATTTGGACTTTGGTG
LOC_Os10g07380
OsAffx.30330.1.S1_at--1018--8291Chr10:3876679..3876701 (23 bp)
GGCTTTGGCCTAGAGCTTGGACGAA
LOC_Os10g07380
OsAffx.30330.1.S1_at--720--8011Chr10:3876588..3876612 (25 bp)
GGAGGCTATGTGGACTTTGGAAATT
LOC_Os10g07380
OsAffx.30330.1.S1_at--747--5591Chr10:3876569..3876593 (25 bp)
GAAATTATTTTTCGAGCTGAGCGGT
LOC_Os10g07380
OsAffx.30330.1.S1_at--1014--10031Chr10:3876521..3876540 (20 bp)
TAGAGCAGTGGGTCCCCTGGCAGGA
LOC_Os10g07380
OsAffx.30330.1.S1_at--1073--8251Chr10:3876374..3876398 (25 bp)
GGCAGCGATCCAAATGGCGTAGGCA
LOC_Os10g07380
OsAffx.30330.1.S1_at--557--5151Chr10:3876247..3876271 (25 bp)
GCAACGATAGGACCGCGGTGGCTTT
LOC_Os10g07380
OsAffx.30330.1.S1_at--1121--2871Chr10:3876097..3876121 (25 bp)
AAGGGCGTGACGTTGGCGGGCAGAT
LOC_Os10g07380
Target Sequence 
GCCTGAGGTCTGGTACTCGGACGTACACAGTGCACTTAATTTGGATGTAGAAGGATTCAATTTGGACTTTGGTGGAGGGG
AGGGGCTGCTGATGGGCTTTGGCCTAGAGCTTGGACGAAGAGGGAGGCTATGTGGACTTTGGAAATTATTTTTCGAGCTG
AGCGGTAGAATGGTGGGTCCCACGGAGATGGGGTTAGAGCAGTGGGTCCCCTGGCAGGAGAGCGCCGGCAGCGATCCAAA
TGGCGTAGGCAGGAGGGCGCCGGAGGGCAGGGCACCGGGGTGCGCCAGGGTAGAGGGAGGGAGCTCCGGCACGGTTGGGG
ATGCGACGAGAGCGGCTGTGCTCGGCGGGCGCGGCAACGATAGGACCGCGGTGGCTTTGGGCCGGCGGCGCAGCTTGGTT
CGGCTTCGGCGATGGCGTGGTGCGAGCTCGACGCACGCGTGGCGTCCAGGAGCCAGAAGGAGGATGGGGGCGGCGTCGGG
CGGCTCGGCGGCGCTCGGGAAGGAAGGGCGTGACGTTGGCGGGCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis