Browse Element(s) Details


OsAffx.30345.1.S1_at

Description tigr:9638.m00746
TID=OsAffx.30345.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0876011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08710OsAffx.20709.1.S1_at11/1110+4491444..4492361Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os10g08720OsAffx.30343.1.S1_at10/1110+4499057..4499606hypothetical protein
LOC_Os10g08730OsAffx.30344.1.S1_at11/1110+4501843..4503268hypothetical protein
LOC_Os10g08740Os.2987.3.S1_x_at1/1110+4504225..4507966retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g08750NANA10+4509887..4510673hypothetical protein
LOC_Os10g08760OsAffx.30345.1.S1_at11/1110+4514354..4514626hypothetical protein
LOC_Os10g08780Os.8682.1.S1_a_at11/1110+4523660..4524225expressed protein
LOC_Os10g08780Os.8682.1.S1_at11/1110+4523660..4524225expressed protein
LOC_Os10g08780Os.8682.2.S1_x_at8/1110+4523660..4524225expressed protein
LOC_Os10g08790NANA10+4528942..4529406hypothetical protein
LOC_Os10g08800NANA10+4530512..4531009retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08810Os.27691.1.S1_x_at1/1110+4532950..4534102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08820NANA10+4534354..4538919retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30345.1.S1_at--501--10551Chr10:4514552..4514576 (25 bp)
TTCTCCTCCTTTCTCTTCGGACTGG
LOC_Os10g08760
OsAffx.30345.1.S1_at--482--9511Chr10:4514541..4514565 (25 bp)
TCTCTTCGGACTGGGAGCAACGAAA
LOC_Os10g08760
OsAffx.30345.1.S1_at--17--1951Chr10:4514532..4514556 (25 bp)
ACTGGGAGCAACGAAAGCGGCTTGC
LOC_Os10g08760
OsAffx.30345.1.S1_at--390--2671Chr10:4514518..4514542 (25 bp)
AAGCGGCTTGCGGTGAGGGCCGAAG
LOC_Os10g08760
OsAffx.30345.1.S1_at--778--4191Chr10:4514480..4514504 (25 bp)
CCCGAGGAGCGGCAAGTGGTCCACG
LOC_Os10g08760
OsAffx.30345.1.S1_at--39--7711Chr10:4514455..4514479 (25 bp)
GGGTGCCCTGGTGAGGCTTCCTCAC
LOC_Os10g08760
OsAffx.30345.1.S1_at--276--9411Chr10:4514419..4514443 (25 bp)
TCGGTCCGGCAAACGAACCGGCTAG
LOC_Os10g08760
OsAffx.30345.1.S1_at--239--2371Chr10:4514409..4514433 (25 bp)
AAACGAACCGGCTAGCACGTGCTAG
LOC_Os10g08760
OsAffx.30345.1.S1_at--263--2633Chr08:19256353..19256373 (21 bp)
AACCGGCTAGCACGTGCTAGAGCGT
NONE
OsAffx.30345.1.S1_at--835--1491Chr10:4514396..4514420 (25 bp)
AGCACGTGCTAGAGCGTGGTTCGCC
LOC_Os10g08760
OsAffx.30345.1.S1_at--936--9071Chr10:4514390..4514414 (25 bp)
TGCTAGAGCGTGGTTCGCCGGAGAA
LOC_Os10g08760
Target Sequence 
TTCTCCTCCTTTCTCTTCGGACTGGGAGCAACGAAAGCGGCTTGCGGTGAGGGCCGAAGTGCGGCGGCGCAGCCCGAGGA
GCGGCAAGTGGTCCACGGGGTGCCCTGGTGAGGCTTCCTCACGACCAACGACTTCGGTCCGGCAAACGAACCGGCTAGCA
CGTGCTAGAGCGTGGTTCGCCGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis