Browse Element(s) Details


OsAffx.30394.1.S1_at

Description tigr:9638.m01064
TID=OsAffx.30394.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1182011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11794OsAffx.31892.2.S1_x_at11/1110+6284476..6296025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11794OsAffx.31892.2.S1_at11/1110+6284476..6296025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11794OsAffx.7216.1.S1_at2/1110+6284476..6296025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11794OsAffx.24431.1.S1_at2/1110+6284476..6296025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11794OsAffx.16438.1.S1_at1/1110+6284476..6296025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11794OsAffx.31892.5.S1_x_at1/1110+6284476..6296025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11810Os.7543.1.S1_at11/1110+6305945..6309391mannitol dehydrogenase, putative, expressed
LOC_Os10g11820OsAffx.30394.1.S1_at11/1110+6317266..6320164expressed protein
LOC_Os10g11830NANA10+6322727..6323140expressed protein
LOC_Os10g11844NANA10+6330568..6332687hypothetical protein
LOC_Os10g11860Os.46865.1.S1_at10/1110+6342762..6347125MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30394.1.S1_at--832--1291Chr10:6318104..6318128 (25 bp)
AGATGACCCTTTTTCTGAAGCAGCC
LOC_Os10g11820
OsAffx.30394.1.S1_at--699--3871Chr10:6318064..6318088 (25 bp)
CTGTTCTTTGAGTTCATTCCGCAGA
LOC_Os10g11820
OsAffx.30394.1.S1_at--675--6731Chr10:6318053..6318077 (25 bp)
GTTCATTCCGCAGAAACCACATTAC
LOC_Os10g11820
OsAffx.30394.1.S1_at--609--1711Chr10:6318038..6318062 (25 bp)
ACCACATTACCGAGGGTTGCTGAAC
LOC_Os10g11820
OsAffx.30394.1.S1_at--328--8051Chr10:6317998..6318022 (25 bp)
GGAGATCTAGCCTACAGTGGACTAT
LOC_Os10g11820
OsAffx.30394.1.S1_at--385--8111Chr10:6317980..6318004 (25 bp)
GGACTATGGTTTTTGCTGGTTGGTT
LOC_Os10g11820
OsAffx.30394.1.S1_at--795--771Chr10:6317859..6317883 (25 bp)
ATGTGAAACATCTCATTGCCCGCTT
LOC_Os10g11820
OsAffx.30394.1.S1_at--1006--71Chr10:6317845..6317869 (25 bp)
ATTGCCCGCTTGAAGGAGCCACAAA
LOC_Os10g11820
OsAffx.30394.1.S1_at--483--5271Chr10:6317834..6317858 (25 bp)
GAAGGAGCCACAAAGCCGTCTTAGG
LOC_Os10g11820
OsAffx.30394.1.S1_at--1033--1671Chr10:6317821..6317845 (25 bp)
AGCCGTCTTAGGCTGCTTCAAGATT
LOC_Os10g11820
OsAffx.30394.1.S1_at--408--6771Chr10:6317747..6317771 (25 bp)
GTTACAATCACTGTCAAGCCATCTG
LOC_Os10g11820
Target Sequence 
AGATGACCCTTTTTCTGAAGCAGCCAGGAGGGAATACCCTCTGTTCTTTGAGTTCATTCCGCAGAAACCACATTACCGAG
GGTTGCTGAACAATGATGAAGCTCTAGGAGATCTAGCCTACAGTGGACTATGGTTTTTGCTGGTTGGTTTAGCTAAGGAG
GTGCTCAAGACATCATGTGATACAGATGCTTCTGAGATTGTTTGTTTGATGAAAAAGGCTCAGGAATTGGAGCAACTAGG
GTTCAATGTGAAACATCTCATTGCCCGCTTGAAGGAGCCACAAAGCCGTCTTAGGCTGCTTCAAGATTCTATTACAAGGC
TTGAGGATGCTCGGAAAAAAGAGCATGAAGCAAACAGGTTACAATCACTGTCAAGCCATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis