Browse Element(s) Details


OsAffx.30434.1.S1_at

Description tigr:9638.m01420
TID=OsAffx.30434.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1727011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17230NANA10+8334208..8336965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17240NANA10+8340121..8340327retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17250Os.10703.2.S1_x_at1/1110+8340644..8346742retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17260Os.46551.1.S1_at11/1110+8347974..8349929Flavonoid 3'-monooxygenase, putative, expressed
LOC_Os10g17270OsAffx.30434.1.S1_at11/1110+8351456..8353955hypothetical protein
LOC_Os10g17270OsAffx.17567.1.S1_x_at1/1110+8351456..8353955hypothetical protein
LOC_Os10g17280Os.10703.1.S1_a_at11/1110+8360530..8365878ATP synthase gamma chain, mitochondrial precursor, putative, expressed
LOC_Os10g17280Os.10703.2.S1_x_at10/1110+8360530..8365878ATP synthase gamma chain, mitochondrial precursor, putative, expressed
LOC_Os10g17290OsAffx.20554.1.S1_at11/1110+8368042..8369336hypothetical protein
LOC_Os10g17300OsAffx.3761.1.S1_x_at2/1110+8371079..8374290hypothetical protein
LOC_Os10g17300OsAffx.30421.1.S1_s_at1/1110+8371079..8374290hypothetical protein
LOC_Os10g17300OsAffx.18377.1.S1_x_at1/1110+8371079..8374290hypothetical protein
LOC_Os10g17310NANA10+8374691..8377727retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30434.1.S1_at--129--8111Chr10:8352861..8352885 (25 bp)
GGACCGTATCAATATCCTACTCTGA
LOC_Os10g17270
OsAffx.30434.1.S1_at--877--1171Chr10:8352458..8352482 (25 bp)
AGTACCCTCAGAATACGGTCTACGG
LOC_Os10g17270
OsAffx.30434.1.S1_at--255--1291Chr10:8352374..8352398 (25 bp)
AGATGACTTCAAGCTACTCCGACAA
LOC_Os10g17270
OsAffx.30434.1.S1_at--802--1991Chr10:8352359..8352383 (25 bp)
ACTCCGACAACTACATTTGCACCAA
LOC_Os10g17270
OsAffx.30434.1.S1_at--537--211Chr10:8352345..8352369 (25 bp)
ATTTGCACCAACTTTGGCTCAGGAG
LOC_Os10g17270
OsAffx.30434.1.S1_at--488--8051Chr10:8352325..8352348 (24 bp)
GGAGATCCAACTCGGACACCATTGA
LOC_Os10g17270
OsAffx.30434.1.S1_at--831--5931Chr10:8351711..8351735 (25 bp)
GAGCAGCTTGGTACGGGACATTGAC
LOC_Os10g17270
OsAffx.30434.1.S1_at--1039--631Chr10:8351637..8351661 (25 bp)
ATGCATGCAGGCTGGAGCGACACCT
LOC_Os10g17270
OsAffx.30434.1.S1_at--533--9031Chr10:8351550..8351574 (25 bp)
TGCAGCCCGACACTGTGACTAGGAT
LOC_Os10g17270
OsAffx.30434.1.S1_at--812--6631Chr10:8351507..8351531 (25 bp)
GTTGTCGCCACTACATCGTACCAAT
LOC_Os10g17270
OsAffx.30434.1.S1_at--469--3531Chr10:8351494..8351518 (25 bp)
CATCGTACCAATCTCAATCGTCGGA
LOC_Os10g17270
Target Sequence 
GGACCGTATCAATATCCTACTCTGAGAAGGGAAGGACTGTATTGTATCATATGGGGTTCGATGTCTCCAAGTTCTACTTG
GTGACCAAGATGATCCTCGGTACAAATACATACCCCCTGAGGGATCATCATACCAACGTACCCCAGTACCCTCAGAATAC
GGTCTACGGGTATCCCCCGTCGACAGTGACGCGCCAGGGAGGGGAACTTGGTGCTCAAGGTTTTGCCAAGATGACTTCAA
GCTACTCCGACAACTACATTTGCACCAACTTTGGCTCAGGAGATCCAACTCGGACACCATTGAGCAGCTTGGTACGGGAC
ATTGACAAGCTGAGGGAGTGCATGATGGTGCGGAGCAGCGGCAGCGACGACATGGATGCATGCAGGCTGGAGCGACACCT
TGCCGGCGGGTGGAGGCATGTTGTGCCGAAGCAGGAGCGCGTACGGAAGAACATGTTCAAGGTGCAGCCCGACACTGTGA
CTAGGATGTTGGTGTGGTTCCGGCCGTTGTCGCCACTACATCGTACCAATCTCAATCGTCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis