Browse Element(s) Details


OsAffx.30457.1.S1_s_at

Description gb:NM_195867.1
DB_XREF= gi:37533093
TID=OsAffx.30457.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0035F15.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2013910/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20090Os.11623.1.S1_a_at11/1110+9758099..9763654Cellulose synthase family protein, expressed
LOC_Os10g20100NANA10+9765652..9766167hypothetical protein
LOC_Os10g20120OsAffx.30458.2.S1_at11/1110+9770391..9772793D-mannose binding lectin family protein, expressed
LOC_Os10g20120OsAffx.30458.1.S1_x_at3/1110+9770391..9772793D-mannose binding lectin family protein, expressed
LOC_Os10g20139OsAffx.30457.3.S1_s_at11/1110+9776422..9781090transposon protein, putative, unclassified
LOC_Os10g20139OsAffx.30457.1.S1_s_at10/1110+9776422..9781090transposon protein, putative, unclassified
LOC_Os10g20160OsAffx.30458.1.S1_x_at11/1110+9789099..9791522D-mannose binding lectin family protein
LOC_Os10g20160OsAffx.30458.1.S1_at11/1110+9789099..9791522D-mannose binding lectin family protein
LOC_Os10g20170Os.47999.3.S1_x_at5/1110+9793803..9799972retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20170OsAffx.20691.1.S1_x_at1/1110+9793803..9799972retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20170OsAffx.21161.1.S1_at1/1110+9793803..9799972retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20180NANA10+9800399..9802398transposon protein, putative, unclassified
LOC_Os10g20190Os.45173.5.S1_x_at4/1110+9805577..9811053retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30457.1.S1_s_at--262--2891Chr10:9779449..9779473 (25 bp)
AAGGGACATGGGTCAACTGGACTGA
LOC_Os10g20139
OsAffx.30457.1.S1_s_at--655--5371Chr10:9779475..9779499 (25 bp)
GAAGAAAATCTACGGCTCCTTAGTT
LOC_Os10g20139
OsAffx.30457.1.S1_s_at--484--9931Chr10:9779485..9779509 (25 bp)
TACGGCTCCTTAGTTCTTGGTTGAA
LOC_Os10g20139
OsAffx.30457.1.S1_s_at--1081--1071Chr10:9779562..9779586 (25 bp)
AGGGCTGTAGCTGCAGAGTATAACA
LOC_Os10g20139
OsAffx.30457.1.S1_s_at--441--3091Chr10:9779589..9779613 (25 bp)
AATACACGTCGTAATGATCGCAAAA
LOC_Os10g20139
OsAffx.30457.1.S1_s_at--128--711Chr10:9779602..9779626 (25 bp)
ATGATCGCAAAAGGACAGTCGTGAA
LOC_Os10g20139
OsAffx.30457.1.S1_s_at--422--451NONE
ATCTAGAGGAGGCACAACACGCAGA
NONE
OsAffx.30457.1.S1_s_at--289--5371Chr10:9780773..9780797 (25 bp)
GAAGACCAAGTTCCGAGGTGCGCAC
LOC_Os10g20139
OsAffx.30457.1.S1_s_at--103--4571Chr10:9780854..9780878 (25 bp)
GCGCCCGCAAGTAGGCCGATGAGAA
LOC_Os10g20139
OsAffx.30457.1.S1_s_at--1060--1031Chr10:9780878..9780902 (25 bp)
AGGTGCGTGTCCAGGAGGCCATCTC
LOC_Os10g20139
OsAffx.30457.1.S1_s_at--344--1651Chr10:9780945..9780969 (25 bp)
AGCGCTTCTTCGACGGGCACAAGAT
LOC_Os10g20139
Target Sequence 
AAGGGACATGGGTCAACTGGACTGAAGAAGAAAATCTACGGCTCCTTAGTTCTTGGTTGAACAATTCAGTGGATCCAATA
GATAGCAATGACAAGAAGTCAGAGTACTATTGGAGGGCTGTAGCTGCAGAGTATAACAACAATACACGTCGTAATGATCG
CAAAAGGACAGTCGTGAAATCTAGAGGAGGCACAACACGCAGAGGAGGAGGCGCTAGCGCTCGCCGAGATGGAGAAGACC
AAGTTCCGAGGTGCGCACCCGCCAGGAGGGCGACAAGAAGGTGCGCGCCCGCCGGGAGGCTGACGGGAAGGTGCGCGCCC
GCAAGTAGGCCGATGAGAAGGTGCGTGTCCAGGAGGCCATCTCCAGCCACGACTTCCACTACCGACAACATCGAGCTCAC
CACCGAGCGCTTCTTCGACGGGCACAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30457.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis