Browse Element(s) Details


OsAffx.30497.1.S1_at

Description tigr:9638.m01879
TID=OsAffx.30497.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative disease resistance gene
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2229010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22230NANA10+11174458..11175845Zinc knuckle family protein
LOC_Os10g22240NANA10+11178521..11181474retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22250OsAffx.22722.1.S1_x_at1/1110+11181967..11184492retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22260OsAffx.20440.1.S1_at11/1110+11186035..11188953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22260OsAffx.20440.1.S1_x_at11/1110+11186035..11188953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22260OsAffx.20440.2.S1_x_at3/1110+11186035..11188953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22270OsAffx.18344.1.S1_at11/1110+11191642..11191958hypothetical protein
LOC_Os10g22290OsAffx.30497.1.S1_at10/1110+11194428..11196644hypothetical protein
LOC_Os10g22290Os.41248.5.S1_x_at5/1110+11194428..11196644hypothetical protein
LOC_Os10g22290Os.41248.2.A1_at2/1110+11194428..11196644hypothetical protein
LOC_Os10g22300OsAffx.20439.1.S1_at11/1110+11197659..11204011NB-ARC domain containing protein, expressed
LOC_Os10g22310Os.46885.2.S1_x_at11/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22310Os.46885.1.S1_x_at11/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22310Os.46885.1.S1_at11/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22310Os.46885.2.S1_at10/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22320NANA10+11208808..11209218hypothetical protein
LOC_Os10g22330Os.7061.1.S1_at10/1110+11211712..11214648Adapter-related protein complex 4 sigma 1 subunit, putative, expressed
LOC_Os10g22340OsAffx.228.1.S1_at10/1110+11217009..11218485transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30497.1.S1_at--442--7571NONE
GGGCTGTTAGGATACACGACATATC
NONE
OsAffx.30497.1.S1_at--1019--10151Chr10:11196148..11196172 (25 bp)
TATCACTAACAAGGGCGCTCAGGGA
LOC_Os10g22290
OsAffx.30497.1.S1_at--1023--9451Chr10:11196177..11196201 (25 bp)
TCGGCCCGGCTGTATGAGCTCAAGA
LOC_Os10g22290
OsAffx.30497.1.S1_at--922--5891Chr10:11196192..11196216 (25 bp)
GAGCTCAAGACCAAGTACGCCGGCC
LOC_Os10g22290
OsAffx.30497.1.S1_at--975--4251Chr10:11196229..11196253 (25 bp)
CCGGACCACCGTCAGCGGCGAAGAA
LOC_Os10g22290
OsAffx.30497.1.S1_at--61--5371Chr10:11196248..11196272 (25 bp)
GAAGAAGTCTTCTGCTATGTCCGAG
LOC_Os10g22290
OsAffx.30497.1.S1_at--762--9071Chr10:11196260..11196284 (25 bp)
TGCTATGTCCGAGCCGGTGCCAGCT
LOC_Os10g22290
OsAffx.30497.1.S1_at--298--4551Chr10:11196435..11196459 (25 bp)
GCGCTCGCCAAGCAAGTGTACGACG
LOC_Os10g22290
OsAffx.30497.1.S1_at--666--5031Chr10:11196473..11196497 (25 bp)
GCAGTTCAGCCCGATGGTTTGGGTT
LOC_Os10g22290
OsAffx.30497.1.S1_at--453--6551Chr10:11196542..11196566 (25 bp)
GATTAAGAAGTTTGGGTCGCAGGTT
LOC_Os10g22290
OsAffx.30497.1.S1_at--1026--5651Chr10:11196582..11196606 (25 bp)
GACATGGCCGACGTTGAGCATCTAA
LOC_Os10g22290
Target Sequence 
GGGCTGTTAGGATACACGACATATCACTAACAAGGGCGCTCAGGGAGGAGTCGGCCCGGCTGTATGAGCTCAAGACCAAG
TACGCCGGCCCCATGGCCGCCACCGGACCACCGTCAGCGGCGAAGAAGTCTTCTGCTATGTCCGAGCCGGTGCCAGCTCT
CCGACGTAACCTCGTCGGCATGGAGGCTCCCCGGAGGGAGCTGCTGGAGCTGGTGGAGGAGGAGGAGGAGGAGGAGGAAG
CCGAGGGCGGCAAGAAGCGGCGGCAGAAGGTGATCTCCATCGTCGGGTTCGGTGGCCTAGGGAAGACCGCGCTCGCCAAG
CAAGTGTACGACGACGTCGGCGGCGGGCAGTTCAGCCCGATGGTTTGGGTTAGCGCGGCGGAGAAGACCGCCGAGGAGGT
TCTCGAGGAGATACTGATTAAGAAGTTTGGGTCGCAGGTTAGGGATGACGACGACGACATGGCCGACGTTGAGCATCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30497.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis