Browse Element(s) Details


OsAffx.30529.1.S1_at

Description tigr:9638.m02148
TID=OsAffx.30529.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2541011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25360Os.11059.1.S1_at11/1110+12781352..12783830signal peptide peptidase family protein, expressed
LOC_Os10g25380OsAffx.8162.1.S1_at11/1110+12791795..12796114GDSL-like Lipase/Acylhydrolase family protein
LOC_Os10g25400Os.46844.1.S1_at11/1110+12800005..12801899GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25410OsAffx.30529.1.S1_at11/1110+12805802..12806286hypothetical protein
LOC_Os10g25420Os.46805.2.S1_x_at11/1110+12810970..12813202GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25420Os.46805.2.S1_at11/1110+12810970..12813202GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25420Os.46805.1.S1_at10/1110+12810970..12813202GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25430NANA10+12819452..12822562serine-threonine protein phosphatase, putative, expressed
LOC_Os10g25450OsAffx.18396.1.S1_at11/1110+12828966..12832148Subtilisin N-terminal Region family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30529.1.S1_at--719--4391Chr10:12805844..12805868 (25 bp)
GCCAAGGACATGCAAAAGATGGCAT
LOC_Os10g25410
OsAffx.30529.1.S1_at--616--6231Chr10:12805861..12805885 (25 bp)
GATGGCATGGGCAGGGATGGTTCAA
LOC_Os10g25410
OsAffx.30529.1.S1_at--81--8011Chr10:12805875..12805899 (25 bp)
GGATGGTTCAAAGGGCGGCGGCCAT
LOC_Os10g25410
OsAffx.30529.1.S1_at--213--3931Chr10:12805893..12805917 (25 bp)
CGGCCATGGAGCACACAGCTGGTGT
LOC_Os10g25410
OsAffx.30529.1.S1_at--1080--4411Chr10:12805895..12805919 (25 bp)
GCCATGGAGCACACAGCTGGTGTTC
LOC_Os10g25410
OsAffx.30529.1.S1_at--1033--4331Chr10:12805896..12805920 (25 bp)
CCATGGAGCACACAGCTGGTGTTCA
LOC_Os10g25410
OsAffx.30529.1.S1_at--45--3511Chr10:12805897..12805921 (25 bp)
CATGGAGCACACAGCTGGTGTTCAT
LOC_Os10g25410
OsAffx.30529.1.S1_at--1113--8531Chr10:12805899..12805923 (25 bp)
TGGAGCACACAGCTGGTGTTCATGT
LOC_Os10g25410
OsAffx.30529.1.S1_at--574--8071Chr10:12805900..12805924 (25 bp)
GGAGCACACAGCTGGTGTTCATGTG
LOC_Os10g25410
OsAffx.30529.1.S1_at--962--1491Chr10:12805902..12805926 (25 bp)
AGCACACAGCTGGTGTTCATGTGCC
LOC_Os10g25410
OsAffx.30529.1.S1_at--358--5131Chr10:12805903..12805927 (25 bp)
GCACACAGCTGGTGTTCATGTGCCC
LOC_Os10g25410
Target Sequence 
GCCAAGGACATGCAAAAGATGGCATGGGCAGGGATGGTTCAAAGGGCGGCGGCCATGGAGCACACAGCTGGTGTTCATGT
GCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30529.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis